Table 2.
Primary composition of communities in terms of key biomedical concepts.
| Com. Id. | Total Elements | Key Biomedical Concepts |
|---|---|---|
| 5023 | 549 | Clinical (Age, Treatment, Summary, Dosage, Diagnosis) |
| Cancer (Stage, Tumor, Cell, Sample, Rate) | ||
| Genomics (Experiment, Target, Function, Interaction, Correlation, Assembly, Association, Expression, Genetic) | ||
| 3098 | 281 | Protein and Genomic Sequences (Sequence, Position, Start, Length, Protein, End, Repeat, Gene, Match, Begin, Translation, Exact, Exon, Frame, Distance) |
| 2842 | 271 | Clinical (Date, Condition, Entry, Process, Person, Diagnosis, Participant, Outcome, Indication, Therapy, Evidence, Access) |
| 4346 | 260 | Data (Code, Reference, Database, Sample, Data, Ontology, Semantic, Experiment, Dataset, Assembly, Registry) |
| 2879 | 231 | Clinical (Clinical, Group, ICD) |
| Genetic (Gene, Entity, Ncbigene, Species, Atom, Ref) | ||
| 3945 | 228 | Biomedical Relations (Disease, Relationship, Expression, Gene, Level, Sample, Drug, Interaction, Component) |
| 2515 | 211 | Protein (Protein, Site, Region, Molecule, Domain, Binding, Interaction, Active, Atom, Canonical, Primary, Structure) |
| 63676 | 210 | Literature (Description, Author, Entity, Details, Note, Article, Issue, List, Type, Study, Entry, Document, Data, Address) |
| 1417 | 192 | Identifiers (Uniprot, Identifier, Accession, Ensembl, Taxonomy, PDB, Genbank, Gene, MGI, Database, Id, Refseq, NCBI, CDS) |
| 1632 | 171 | Identifiers (Id, Taxon, Mesh, Entity, Type) |
| Genomics (Platform, Entry, Sample, Genus, Array, Gene, List) | ||
| 3249 | 171 | Genotype–Phenotype Associations (Gene, Symbol, Association, Product, Variant, Tag, Locus, Phenotype, Allele, Disease) |
| 5652 | 158 | Genomics (RNA, Probe, Strand, Direction, Region, DNA) |
| 1446 | 132 | Software (Version, Software, File, Format, Image, Email, Scale) |
| 2535 | 126 | Drug (Drug, Chemical, Action, Ingredient, Bond, Activity) |
| 2421 | 110 | Chromosome (Location, Chromosome, Entity, Cellular) |
| 2317 | 105 | Pathway (Pathway, Molecular, Formula) |
| Unit (Weight, Body, Units, Volume, Unit) | ||
| 1806 | 101 | Source (Source, Natural, Vector, Derived, Tissue) |
| 2672 | 99 | Literature (Count, Text, Comment, Editor, List, Data, Notes) |
| 6316 | 97 | Ontology (Annotation, Ontology, Type, Structure) |
| 5969 | 83 | Social (Status, Gender, Authority, Interaction) |
| 2429 | 79 | mRNA (Transcript, mRNA, Signal, Frequency, Expression) |
| 1868 | 77 | Literature (Citation, Publication, Journal, Literature) |
| 1349 | 67 | Assay (Method, Assay, Type, Measurement) |
| 6241 | 62 | Genetic (Strain, Allele, Mutation, Genotype, SNP) |
| 6052* | 50 | Enzyme (EC, Enzyme, Reaction) |
| 3524* | 50 | Phenotype (Phenotype, Omim) |
| 2490 | 50 | Organization (Component, Complex, Assembly, Entity) |
| 1849 | 49 | Interaction (Interaction, Experiment, Strength) |
| 2897 | 49 | Cell Line (Cell, Line, Tissue, Type, Node) |
| 6283 | 39 | Organism (Organism, Host, Entity) |
| 2911 | 38 | Ontology (Synonym, Term, Ontology) |
| 1787 | 32 | Evolution (Member, Family, Orthologue, Homologue, Evidence) |
| 5695 | 31 | Literature (Pubmed, Keyword) |
(*) marked communities are visualized in Fig. 6.