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. 2019 Dec 14;22(1):346–359. doi: 10.1093/bib/bbz153

Table 2.

The list of symbols and notations used in this paper

Symbol Description
Inline graphic Inline graphic; set of Inline graphic cell lines
Inline graphic Inline graphic; set of Inline graphic drugs
Inline graphic Drug response matrix (main input), Inline graphic
Inline graphic Predicted drug response value (output), (It might be real value or binary value, depends on the problem.)
Inline graphic General notation for similarity matrix
Inline graphic Cell line similarity matrix, Inline graphic
Inline graphic Drug similarity matrix, Inline graphic
Inline graphic Target similarity matrix, Inline graphic
Inline graphic Low-rank representation of cell lines, Inline graphic
Inline graphic Low-rank representation of drugs, Inline graphic
Inline graphic Feature matrix, Inline graphic, (side information representing features separately from similarity matrices)
Inline graphic Low-rank representation of feature matrix, Inline graphic
Inline graphic Projection matrix for dimensionality reduction
Inline graphic Bias term matrix for drugs and cell lines
Inline graphic General notation for a kernel matrix
Inline graphic Cell line kernel matrix, Inline graphic
Inline graphic Drug kernel matrix, Inline graphic
Inline graphic Kernel weights; Inline graphic, Inline graphic number of matrices.
Inline graphic Drug target interaction matrix, Inline graphic