Table 2.
An overview of the protein prediction and application of disease biomarker. N/A = not application (no application discussion in this article)
Study | Body fluid | Algorithm | Size of training data set | # of selected features | Performance | Application outcome | Ref |
---|---|---|---|---|---|---|---|
Cui et al. (2008) | Bloodstream | SVM | 6696 (151/6545) | 85 | 0.94 (AUC) | 13 biomarkers in gastric cancer; 26 biomarkers in lung cancer | [20] |
Hong et al. (2011) | Urine | 3940 (1313/2627) | 74 | 0.90 (AUC) | Six biomarkers in gastric cancer | [22] | |
Wang et al. (2013) | Saliva | 7077 (261/6816) | 55 | 0.81 (AUC) | 37 biomarkers in breast cancer | [25] | |
Sun et al. (2015) | Saliva | 2757 (556/2201) | 68 | 0.90 (Accuracy) | 29 biomarkers in head and neck cancer | [24] | |
Wang et al. (2016) | Urine | 2000 (1000/1000) | 87 | 0.93 (AUC) | 29 biomarkers in lung cancer | [23] | |
Liu et al. (2010) | Bloodstream | Ranking | 11 394 (253/11 141) | 85 | 0.66 (AUC) | N/A | [21] |
Hu et al. (2011) | Body fluids | PPI | 529 | N/A | 0.96 (Accuracy) | N/A | [26] |