uKIN combines new and prior information with guided network propagation to accurately identify disease genes

. Author manuscript; available in PMC: 2021 Jun 24.

Published in final edited form as: Cell Syst. 2020 Jun 24;10(6):470–479.e3. doi: 10.1016/j.cels.2020.05.008

KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Software and Algorithms
DriverNet	Bashashati et al., (2012)	https://www.bioconductor.org/packages/release/bioc/html/DriverNet.html
DSD	Cao et al. (2013)	http://dsd.cs.tufts.edu/server/
Hotnet2	Leiserson et al. (2015)	https://github.com/raphael-group/hotnet2
Muffinn	Cho et al. (2016)	http://www.inetbio.org/muffinn/
MutSigCV	Lawrence et al. (2013)	http://archive.broadinstitute.org/cancer/cga/mutsig
nCOP	Hristov and Singh (2017)	https://github.com/Singh-Lab/nCOP
uKIN	This paper	https://github.com/Singh-Lab/uKIN
Other
Biogrid	Stark et al. (2006)	https://thebiogrid.org/
GWAS	Buniello et al., (2019)	https://www.ebi.ac.uk/gwas/
HPRD	Prasad et al. (2009)	http://www.hprd.org/
OMIM	Online Mendelian Inheritance in Man	https://omim.org/
TCGA	TCGA Research Network	https://cancergenome.nih.gov/