Skeletal muscle mitochondria were isolated from control and CKD mice and subsequently permeabilized using alamethicin (0.03 mg/mL) or were lysed in cell lytic and underwent freeze thaw cycles for complex enzymatic assays (complexes I–V). (A) Matrix dehydrogenase activity was measured for the following enzymes: pyruvate dehydrogenase (PDH), glutamate dehydrogenase (GDH), malate dehydrogenase (MDH), alpha ketoglutarate dehydrogenase (AKGDH), branched chain keto acid dehydrogenase (BCKDH), isocitrate dehydrogenase (ICDH), and malic enzyme (n = 5–7/group/sex). (B) Enzyme activity of the complexes of the ETS was assessed using standard biochemical assays (n = 6–7/group/sex). All data were analyzed using a 2-way ANOVA. Error bars show standard deviation.