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| Number of identified proteins (5% local-FDR)a | Reference proteome database | Number of quantified proteins (5% local-FDR) |
|---|---|---|
| 802 | Plant (SwissProt database) | 523 |
| 783 | Populus trichocarpa (UP000006729) | 536 |
| 608 | Arabidopsis thaliana (UP000006548) | 424 |
| 1,388 | Quercus suber (CorkOakDB) | 841 |
aA local false discovery rate of 5% was used as criteria for acceptance of peptide assignments and protein identifications.
