Table 4. Proteins from the selected dataset assigned to Biological process GO terms with the highest enrichment scores.
| Enrichement analysis | SWATH analysis | Data analysis | ||||
|---|---|---|---|---|---|---|
| GO Group title and number | GO groupa | Arabidopsis Uniprot Accessionb | Protein name (initials)b | Potential subcellular locationc | Potential pathway or biological processesd | LOG2FCe |
| Pyridine-containing compound metabolic process (4) | 4.6 | O04499 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 (PMG1/iPGAM) | Cytoplasm | Glycolysis | 0.9 |
| 4 | Q9SRZ6 | Isocitrate dehydrogenase [NADP] (ICDHC/cICDH) | Cytoplasm | Plant defense; Oxidative stress | 0.4 | |
| 4 | Q9LF98 | Fructose-bisphosphate aldolase 8 (ALFC8/FBA8) | Cytoplasm | Glycolysis; Stress signalling | -0.3 | |
| Monosaccharide catabolic process (6) | 6 | O49299 | Probable phosphoglucomutase, cytoplasmic 1 (PGMC1/PGM1) | Cytoplasm | Carbohydrate metabolism | 0.2 |
| 4.6 | Q42525 | Hexokinase-1 (HXK1) | Cytoplasm Nucleous | Glycolysis; Stress signalling | -0.3 | |
| 4.6 | Q9SAU2 | D-ribulose-5-phosphate-3-epimerase (Q9SAU2/RPE) | Chloroplast | Photosynthesis | -0.2 | |
| Cellular metabolic compound salvage (3) | 3 | P10795 | Ribulose bisphosphate carboxylase small chain 1A (RBS1A/RBCS1A) | Chloroplast | Photorespiration; Photosynthesis | -3.1 |
| 3 | P25697 | Phosphoribulokinase (KPPR/PRK) | Chloroplast | Photosynthesis; Plant defense | -0.6 | |
| 3 | Q9LRR9 | (S)-2-hydroxy-acid oxidase GLO1 (GLO1/GOX1) | Peroxisome | Plant defense; Photorespiration | -0.6 | |
| 3.1 | F4KDZ4 | Malate dehydrogenase (F4KDZ4/PMDH2) | Peroxisome | Fatty acid ß-oxidation | -0.3 | |
| Protein-DNA complex assembly (5) | 5 | A8MRL0 | Histone superfamily protein H3.3 (A8MRL0/AT4G40030) | Nucleus | DNA-binding; Protein heterodimerization | 1.1 |
| 5.2 | Q9SEI3 | 26S proteasome regulatory subunit 10B homolog A (PS10A/RTP4A) | Nucleus | Effector Triggered Imunity; ATPase activity | 0.6 | |
| 5 | P59259 | Histone H4 (H4/HIS4) | Nucleus | Nucleosome assembly; Protein heterodimerization | 0.5 | |
| 5 | Q8LB10 | ATP-dependent Clp protease proteolytic subunit-related protein 4 (CLPR4) | Chloroplast | Plastid protein homeostasis; Protein degradation | 0.3 | |
| Lipid oxidation (1) | 1 | P38418 | Lipoxygenase 2 (LOX2) | Chloroplast | Lipid metabolism; Biotic stress | 1.2 |
| 1 | F4JYM8 | Thiolase family protein (F4JYM8/AACT1) | Peroxisome | Transferase activity | -0.6 | |
| Response to endoplasmic reticulum stress (2) | 2 | P27323 | Heat shock protein 90–1 (HSP901) | Cytoplasm | Chaperone; Plant defense | 1.7 |
| 2 | Q9S9N1 | Heat shock 70–5 (HSP7E/BiP1) | Endoplasmic Reticulun | Chaperone; Plant defense | 0.7 | |
aThe proteins included in more than one GO group were referenced only once in Table 4 with an indication of the numbers of the groups with which they were associated.
bThe table includes information about the protein names linked to Arabidopis Uniprot Accessions, used as a reference for the cork oak leaf proteomic profiles.
cSuggestions of the potential subcellular locations, based on the annotation in protein databases and available bibliography.
dInferences about the possible biological processes associated with proteins in the context of this study.
eFold change ratio logarithm of protein abundance in inoculated samples over control greater than 1 or less than -1 (Log2FC).