Table 1.
Loci | Primer sequence (5′-3′) | Temperature(°C) | Allele range | Applicable groups |
---|---|---|---|---|
MCW0029 | GTGGACACCCATTTGTACCCTATG | 63.8 | 139-188 | Outbred group |
CATGCAATTCAGGACCGTGCA | ||||
ADL0293 | GTAATCTAGAAACCCCATCT | 53.9 | 106-120 | Outbred group |
ACATACCGCAGTCTTTGTTC | ||||
ADL0317 | AGTTGGTTTCAGCCATCCAT | 58.5 | 177-219 | Outbred group |
CCCAGAGCACACTGTCACTG | ||||
GCT0016 | TCCAAGGTTCTCCAGTTC | 52.2 | 111-148 | Outbred group |
GGCATAAGGATAGCAACAG | ||||
ADL0304 | GGGGAGGAACTCTGGAAATG | 53.9 | 138-161 | Outbred group |
CCTCATGCTTCGTGCTTTTT | ||||
LEI0074 | GACCTGGTCCTGACATGGGTG | 58.5 | 221-243 | Outbred group |
GTTTGCTGATTAGCCATCGCG | ||||
ADL328 | CACCCATAGCTGTGACTTTG | 53.9 | 107-120 | Outbred group |
AAAACCGGAATGTGTAACTG | ||||
GGANTECl | GCGGGGCCGTTATCAGAGCA | 65.0 | 139-194 | Outbred group |
AGTGCAGGGCGCTCCTGGT | ||||
LEI094 | CAGGATGGCTGTTATGCTTCCA | 56.0 | 176-211 | Outbred group |
CACAGTGCAGAGTGGTGCGA | ||||
MCW0330 | TGGACCTCATCAGTCTGACAG | 58.5 | 217-287 | Outbred group |
AATGTTCTCATAGAGTTCCTGC | ||||
LEI0141 | CGCATTTGATGCATAACACATG | 52.2 | 221-245 | Outbred group |
AAGGCAAACTCAGCTGGAACG | ||||
MCW0087 | ATTTCTGCAGCCAACTTGGAG | 58.5 | 268-289 | Outbred group |
CTCAGGCAGTTCTCAAGAACA | ||||
MCW0347 | GCTTCCAGATGAGCTCCATGG | 52.0 | 121-149 | Outbred group |
CACAGCGCTGCAGCAACTG | ||||
ADL176 | TTGTGGATTCTGGTGGTAGC | 58.5 | 183-200 | Outbred group |
TTCTCCCGTAACACTCGTCA | ||||
ADL0201 | GCTGAGGATTCAGATAAGAC | 58.5 | 111-151 | Outbred group |
AATGGCYGACGTTTCACAGC | ||||
GGNCAMZO | GTCACTAGGTTAGCAGCATG | 56.0 | 234 | Outbred group |
GCTGGATACAGACCTCGATT | Haplotype | |||
GGAVIR | AGAGATGGTGCACGCAACCT | 60.7 | 86-89 | Outbred group |
CGAGCACTTTCTGGCAGAGA | Haplotype | |||
MCW0063 | GGCTCCAAAAGCTTGTTCTTAGCT | 53.9 | 116-146 | Outbred group |
GAAAACCAGTAAAGCTTCTTAC | Haplotype | |||
ADL185 | CATGGCAGCTGACTCCAGAT | 58.5 | 116-142 | Outbred group |
AGCGTTACCTGTTCGTTTGC | Haplotype | |||
GGMYC | CGAGGCGCTCTGCGAGTTTA | 62.4 | 139-151 | Outbred group |
TGGGGACCTCTGGCTCTGAC | Haplotype | |||
LEI0094 | GATCTCACCAGTATGAGCTGC | 53.9 | 250-283 | Outbred group |
TCTCACACTGTAACACAGTGC | Haplotype | |||
GGVITC | AGCCATCATTCAGGGCATCT | 58.5 | 86 | Outbred group |
GATGTCCTGAGTGATGCTCA | Haplotype | |||
ADL0292 | CCAAATCAGGCAAAACTTCT | 58.5 | 110-136 | Outbred group |
AAATGGCCTAAGGATGAGGA | Haplotype | |||
GGVITIIG | GGCAGGTTTCTAATGCCTGA | 56.0 | 186-189 | Outbred group |
CCCATCGTTTCAACTGTATG | Haplotype | |||
ADL166 | TGCCAGCCCGTAATCATAGG | 58.5 | 131-154 | Outbred group |
AAGCACCACGACCCAATCTA | Haplotype | |||
MCW0014 | AAAATATTGGCTCTAGGAACTGTC | 58.5 | 172-195 | Outbred group |
ACCGGAAATGAAGGTAAGACTAGC | Haplotype | |||
GGCYMA | AGCGAGGCGCTCTGCGAGTT | 64.6 | 140-153 | Outbred group |
GGGCACCTCTGGCTCTGACC | Haplotype | |||
MCW0402 | ACTGTGCCTAGGACTAGCTG | 56.0 | 141-229 | Outbred group |
CCTAAGTCTGGGCTCTTCTG | Haplotype | |||
STMSGGHU2-1A | CTTAATATGTGTGAGGTGGC | 53.9 | 235-238 | Haplotype |
GTTCTCACAATTGCATTAGC |