Table 3.
The total number of candidate RLK and RLP genes identified in B. rapa. The total number of genes in each chromosome, as well as the conserved genes obtained from the comparison with B. juncea.
| Chromosome | RLK | RLP | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | LysM-RLK | LRR-RLK | Gene Cluster | Conserved | Total | LysM-RLP | LRR-RLP | Gene Cluster | Conserved | ||||||||
| No. of Cluster | No. of Gene in Cluster | Total | LysM-RLK | LRR-RLK | No. of Cluster | No. of Gene in Cluster | Total | LysM-RLP | LRR-RLP | ||||||||
| A genome B. rapa | A01 | 36 | 0 | 36 | 1 | 5 | 29 | 0 | 29 | 10 | 0 | 10 | 0 | 0 | 5 | 0 | 5 |
| A02 | 28 | 0 | 28 | 2 | 9 | 17 | 0 | 17 | 7 | 0 | 7 | 0 | 0 | 2 | 0 | 2 | |
| A03 | 38 | 0 | 38 | 0 | 0 | 30 | 0 | 30 | 9 | 0 | 9 | 0 | 0 | 2 | 0 | 2 | |
| A04 | 16 | 1 | 15 | 1 | 5 | 14 | 1 | 13 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | |
| A05 | 25 | 0 | 25 | 1 | 7 | 19 | 0 | 19 | 6 | 0 | 6 | 1 | 3 | 4 | 0 | 4 | |
| A06 | 49 | 1 | 48 | 3 | 15 | 36 | 1 | 35 | 10 | 1 | 9 | 1 | 3 | 2 | 1 | 1 | |
| A07 | 37 | 0 | 37 | 3 | 12 | 21 | 0 | 21 | 4 | 0 | 4 | 0 | 0 | 2 | 0 | 2 | |
| A08 | 19 | 1 | 18 | 0 | 0 | 15 | 1 | 14 | 7 | 1 | 6 | 0 | 0 | 4 | 1 | 3 | |
| A09 | 26 | 0 | 26 | 0 | 0 | 16 | 0 | 16 | 9 | 0 | 9 | 0 | 0 | 4 | 0 | 4 | |
| A10 | 21 | 0 | 21 | 2 | 7 | 17 | 0 | 17 | 2 | 0 | 2 | 0 | 0 | 1 | 0 | 1 | |
| Total mapped genes | 295 | 3, 1.02% 1 |
292, 98.98% 1 |
13 | 60, 20.34% 1 |
214, 72.54% 1 |
3, 100.00% 2 |
211, 72.26% 3 |
65 | 2, 3.08% 1 |
63, 96.92% 1 |
2 | 6, 9.23% 1 |
27, 41.54% 1 |
2, 100.00% 2 |
25, 39.68% 3 |
|
| Unassigned | 5 | 0 | 5 | - | - | - | - | - | 0 | 0 | 0 | - | - | - | - | - | |
| Total | 300 | 3, 1.00% 4 |
297, 99.00% 4 |
13 | - | - | - | - | 65 | 2, 3.08% 4 |
63, 96.92% 4 |
2 | - | - | - | - | |
1 The proportion in all mapped RLKs or RLPs. 2 The proportion in mapped LysM-RLKs or LysM-RLPs. 3 The proportion in mapped LRR-RLKs or LRR-RLPs. 4 The proportion in all candidate RLKs or RLPs.