Table 4.
The total number of candidate RLK and RLP genes identified in B. juncea. The total number of genes in each chromosome, as well as the conserved genes obtained from the comparison with B. nigra and B. rapa. The total number of syntenic genes in each chromosome of B. juncea A genome, in contrast with B. rapa.
| Chromosome | RLK | RLP | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | LysM- | LRR- | Conserved | Syntenic Genes | Total | LysM | LRR- | Conserved | Syntenic Genes | ||||||
| Total | LysM- | LRR- | Total | LysM- | LRR- | ||||||||||
| A genome B. juncea | A01 | 30 | 0 | 30 | 24 | 0 | 24 | 22 | 12 | 0 | 12 | 6 | 0 | 6 | 5 |
| A02 | 25 | 0 | 25 | 17 | 0 | 17 | 14 | 5 | 0 | 5 | 2 | 0 | 2 | 2 | |
| A03 | 29 | 0 | 29 | 26 | 0 | 26 | 28 | 17 | 0 | 17 | 1 | 0 | 1 | 1 | |
| A04 | 16 | 2 | 14 | 13 | 1 | 12 | 13 | 9 | 0 | 9 | 1 | 0 | 1 | 1 | |
| A05 | 22 | 1 | 21 | 18 | 0 | 18 | 19 | 6 | 0 | 6 | 1 | 0 | 1 | 3 | |
| A06 | 31 | 1 | 30 | 27 | 1 | 26 | 32 | 7 | 1 | 6 | 2 | 1 | 1 | 2 | |
| A07 | 26 | 0 | 26 | 22 | 0 | 22 | 21 | 11 | 0 | 11 | 2 | 0 | 2 | 2 | |
| A08 | 12 | 1 | 11 | 12 | 1 | 11 | 11 | 8 | 0 | 8 | 3 | 0 | 3 | 5 | |
| A09 | 23 | 0 | 23 | 17 | 0 | 17 | 15 | 17 | 0 | 17 | 5 | 0 | 5 | 5 | |
| A10 | 22 | 0 | 22 | 18 | 0 | 18 | 17 | 3 | 0 | 3 | 1 | 0 | 1 | 1 | |
| Total in A genome | 236, 51.53% 1 |
5, 2.12% 2 |
231, 97.88% 2 |
194, 82.20% 2 |
3, 60.00% 3 |
191, 82.68% 4 |
192, 81.36% 2 |
95, 44.81% 1 |
1, 1.05% 2 |
94, 98.95% 2 |
24, 25.26% 2 |
1, 100.00% 3 |
23, 24.47% 4 |
27, 28.42% 2 |
|
| B genome B. juncea | B01 | 27 | 2 | 25 | 24 | 2 | 22 | - | 6 | 0 | 6 | 6 | 0 | 6 | - |
| B02 | 36 | 0 | 36 | 30 | 0 | 30 | - | 10 | 0 | 10 | 3 | 0 | 3 | - | |
| B03 | 30 | 0 | 30 | 27 | 0 | 27 | - | 19 | 1 | 18 | 13 | 1 | 12 | - | |
| B04 | 30 | 1 | 29 | 23 | 1 | 22 | - | 23 | 0 | 23 | 11 | 0 | 11 | - | |
| B05 | 33 | 0 | 33 | 28 | 0 | 28 | - | 18 | 0 | 18 | 11 | 0 | 11 | - | |
| B06 | 20 | 0 | 20 | 17 | 0 | 17 | - | 11 | 0 | 11 | 6 | 0 | 6 | - | |
| B07 | 16 | 0 | 16 | 16 | 0 | 16 | - | 16 | 0 | 16 | 9 | 0 | 9 | - | |
| B08 | 30 | 0 | 30 | 24 | 0 | 24 | - | 14 | 0 | 14 | 6 | 0 | 6 | - | |
| Total in B genome | 222, 48.47% 1 |
3, 1.35% 2 |
219, 98.65% 2 | 189, 85.14% 2 | 3, 100.00% 3 |
186, 84.93% 4 |
- | 117, 55.19% 1 |
1, 0.85% 2 |
116, 99.15% 2 |
65, 55.56% 2 |
1, 100.00% 3 |
64, 55.17% 4 |
- | |
| Total mapped genes | 458 | 8, 1.75% 1 |
450, 98.25% 1 |
383, 83.62% 1 |
6, 75.00% 3 |
377, 83.78% 4 |
- | 212 | 2, 0.94% 1 |
210, 99.06% 1 |
89, 41.98% 1 |
2, 100.00% 3 |
87, 41.43% 4 |
- | |
1 The proportion in all mapped RLKs or RLPs. 2 The proportion in all mapped RLKs or RLPs in each sub-genome of B. juncea. 3 The proportion in mapped LysM-RLKs or LysM-RLPs across the entire genome and each sub-genome of B. juncea. 4 The proportion in mapped LRR-RLKs or LRR-RLPs across the entire genome and each sub-genome of B. juncea.