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. 2020 Dec 25;11(1):24. doi: 10.3390/diagnostics11010024

Table 3.

Key dietary factors with associated epigenetic metabolic effects.

Nutritional Factors Potential Epigenetic Mechanisms Associated Metabolic Outcomes
Caloric restriction/undernutrition DNA methylation
Histone modifications
miRNA
Increased risk of obesity and metabolic disorders (including insulin resistance and diabetes) in adulthood
Fatty Acids
Unsaturated FA
(MUFA, n-3 PUFA)
DNA methylation
Histone modifications
miRNA
Prevention of metabolic derangements (lipid metabolism disturbances, inflammation, and insulin resistance) or chronic diseases (obesity, diabetes, non-alcoholic fatty liver disease, CVD risk and some types of cancer) (Becerra, 2019)
n-6 PUFA, Saturated and trans FA DNA methylation
Histone modifications
miRNA
Associated with the presence or development of obesity, diabetes, inflammatory profile, atherosclerosis, hyperglycemia, insulin resistance, lipid alterations, lipotoxicity, dysregulation of lipid metabolism, and abnormal lipid accumulation (Becerra, 2019)
SCFA DNA methylation
Histone modifications
Interaction with Gut Microbiome
Mixed effects
Methyl donors (e.g., folate, methionine, choline) * DNA methylation Increased risk of metabolic disorders including insulin resistance, diabetes and obesity
Probiotics/Fibers Production of SCFA (same as SCFA) Same as SCFA
Vitamins and minerals (e.g., retinol, ascorbate, tocopherol) DNA methylation
Histone modifications
Antioxidant effects
Polyphenols and other plant compounds Inhibition of DNA hypermethylation
Histone modification
miRNA
May protect against carcinogenesis and obesity on adulthood
Dietary Patterns
High fat diet/Western diet DNA methylation of obesity related genes leading to changes in genes expression and appetite regulation - Imbalance in fatty acids causing oxidative stress and inflammatory state
- Increased risk of obesity and metabolic disorders (including insulin resistance and diabetes) in adulthood
Mediterranean diet DNA methylation Protective against CVD risk and cancer
Intermittent Fasting Improve the expression of anti-oxidant and anti-inflammatory genes May be protective against oxidative stress

Based on evidence from [128,129,130,131]. * Deficiency is associated with negative outcomes perinatally as well as during adulthood; negative outcomes can be reversed by supplementation of methyl donor [130].