Table 1.
The data obtained for 78 pre-selectedsingle-nucleotide polymorphisms(SNPs) [25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60] in patient groups with advanced and lowered target apremilast therapy clinical outcomes. SNP with statistically significant differences are labeled with a star *. The population was from European origin and were healthy. The“1000 Genomes” project is shown for reference.
Gene or Nearby Genomic Region | SNP Reference Sequence | Most Frequent Allele Variant | Minimal Frequency Allele Variants | Allele Frequency in Efficient Target Therapy Response Group | Allele Frequency in Lowered Target Therapy Response Group | Allele Frequency in the Population of European Origin | References |
---|---|---|---|---|---|---|---|
IL1A, IL1B | rs12469600 | T | C | 0.79 | 0.70 | 0.752 | [25] |
IL1B | rs1143633 * | C | T | 0.46 | 0.70 | 0.666 | [29] |
IL1B | rs11676014 | G | A | 0.68 | 0.60 | 0.551 | [26] |
IL1B 2KB upstream | rs16944 | G | A | 0.75 | 0.55 | 0.65 | [28] |
IL1B 500B downstream | rs2853550 | G | A | 0.96 | 0.87 | 0.954 | [28] |
IL2 2KB upstream | rs2069762 | A | C | 0.75 | 0.62 | 0.708 | [31] |
IL2 | rs2069778 | G | A | 0.64 | 0.77 | 0.849 | [31] |
IL-6 | rs1800795 | C | G | 0.46 | 0.43 | 0.444 | [32] |
IL10 2KB upstream | rs1800871 | G | A | 0.79 | 0.62 | 0.76 | [34] |
IL10 2KB upstream | rs1800872 | G | T | 0.79 | 0.62 | 0.76 | [34] |
IL10 2KB upstream | rs1800896 | T | C | 0.50 | 0.62 | 0.547 | [33] |
IL10RA | rs947889 | T | C | 0.46 | 0.62 | 0.54 | Live Ref SNPs |
noncoding (IL-12B) | rs2082412 | G | A | 0.89 | 0.85 | 0.774 | [35] |
IL13, IL4 | rs1800925 | C | T | 0.71 | 0.75 | 0.822 | [36] |
IL13, IL4 | rs20541 * | G | A | 0.57 | 0.80 | 0.793 | [36] |
IL4 2KB upstream | rs2243250 | C | T | 0.57 | 0.75 | 0.832 | [59] |
IL13 3′UTR | rs848 | C | A | 0.57 | 0.77 | 0.787 | [36] |
IL17A | rs10484879 | G | T | 0.93 | 0.82 | 0.75 | [37] |
IL17A 2KB upstream | rs2275913 | G | A | 0.75 | 0.55 | 0.62 | [37] |
IL-17F | rs763780 | T | (C) | 0.89 | 1 | 0.942 | [37] |
IL17RA: 2KB upstream | rs4819554 | A | G | 0.79 | 0.90 | 0.792 | [37] |
IL22 | rs12307915 | T | C | 0.86 | 0.77 | 0.808 | [58] |
IL22 2kb upstream | rs2227473 | C | T | 0.86 | 0.77 | 0.81 | [58] |
IL22 2kb upstream | rs2227483 | A | T | 0.46 | 0.60 | 0.547 | [58] |
IL23R 500B downstream | rs9988642 | T | C | 0.96 | 0.95 | 0.928 | [38] |
IL23R | rs12564022 | C | T | 0.61 | 0.72 | 0.702 | [60] |
IL-23R | rs11209026 | G | A | 0.96 | 0.95 | 0.938 | [42] |
IL23R | rs2201841 * | A | G (T) | 0.5 | 0.75 | 0.7 | [35] |
IL23R | rs2295359 | G | A | 0.64 | 0.55 | 0.686 | [60] |
IL23R | rs11209032 | G | A | 0.57 | 0.65 | 0.666 | [42] |
IL28RA | rs4649203 | A | G | 0.82 | 0.77 | 0.725 | [48] |
TYK2 | rs12720356 | A | C(G) | 0.96 | 0.97 | 0.908 | [43] |
TYK2 | rs280519 | A | G(C) | 0.50 | 0.55 | 0.505 | [43] |
TYK2 | rs2304256 | C | A | 0.79 | 0.80 | 0.738 | [43] |
TYK2 | rs34536443 | G | C | 1 | 1 | 0.971 | [43] |
PDE3A-SLC01C1 | rs3794271 | A | G | 0.54 | 0.60 | 0.635 | [44,45] |
PDE4D (PART1) | rs152312 | G | (A, T) | 0.96 | 0.92 | 0.9 | [46] |
PDE4D | rs2910829 | A | G | 0.71 | 0.52 | 0.56 | [46] |
TNFa | rs1799724 | C | T | 0.79 | 0.82 | 0.906 | [37] |
TNFa | rs1799964 | T | C | 0.82 | 0.72 | 0.79 | [47] |
TNFa | rs1800629 * | G | A | 0.82 | 0.97 | 0.866 | [47] |
TNF 2KB upstream | rs361525 | G | A | 0.93 | 0.92 | 0.936 | [47] |
TNFAIP3 | rs610604 | T | G | 0.64 | 0.67 | 0.662 | [37] |
STAT1 | rs2083482 | T | C | 0.71 | 0.62 | 0.496 | [57] |
STAT2 | rs2020854 | T | C | 0.93 | 0.90 | 0.931 | [53] |
STAT2 | rs2066807 | C | G | 0.93 | 0.90 | 0.933 | [8] |
STAT2 | rs2066808 | A | G | 0.93 | 0.90 | 0.93 | [58] |
STAT3 | rs2293152 | C | G | 0.50 | 0.60 | 0.596 | [27] |
STAT3 | rs8074524 | C | T | 0.86 | 0.77 | 0.8 | Live Ref SNPs |
STAT3 | rs744166 | A | G | 0.68 | 0.55 | 0.585 | [56] |
STAT4 | rs7574865 | G | T | 0.71 | 0.85 | 0.77 | [52] |
STAT4 | rs10181656 | C | G | 0.71 | 0.85 | 0.766 | [52] |
NFkB1 | rs28362491 | INS | DEL | 0.54 | 0.60 | 0.595 | [54] |
NF-kB1A | rs2145623 | G | C | 0.82 | 0.70 | 0.724 | [30] |
NF-kB1A | rs8016947 | T | G | 0.50 | 0.47 | 0.471 | [55] |
NFkB1A | rs12586317 | T | C | 0.61 | 0.65 | 0.737 | [41] |
REL | rs62149416 | T | C | 0.61 | 0.80 | 0.636 | [53] |
REL | rs702873 | C | T | 0.50 | 0.70 | 0.553 | [52] |
RNF114 | rs495337 | G | A | 0.61 | 0.62 | 0.602 | [41] |
ZNF313 | rs2235617 | C | G | 0.61 | 0.65 | 0.602 | [39] |
REV3L | rs240993 | C | A | 0.71 | 0.55 | 0.712 | [30] |
IFNG | rs2430561 | A | T | 0.54 | 0.40 | 0.462 | [51] |
CAST, ERAP1 | rs27524 | G | A | 0.54 | 0.65 | 0.634 | [48] |
HLA-C | rs4406273 | G | A | 0.79 | 0.72 | 0.902 | [50] |
NOS2 | rs4795067 | A | G | 0.50 | 0.57 | 0.641 | [41] |
CYP3A5 | rs776746 | C | T | 1 | 0.92 | 0.943 | PharmGKB |
TSC1 | rs1076160 | C | T | 0.71 | 0.52 | 0.489 | [55] |
FBXL19 | rs10782001 | A | G | 0.54 | 0.62 | 0.641 | [41] |
KCNH7 | rs17716942 | T | C | 0.96 | 0.90 | 0.839 | [39] |
ANXA6 | rs17728338 | G | A | 0.96 | 0.87 | 0.93 | [35] |
HCP5 | rs2395029 | T | G | 0.93 | 0.92 | 0.956 | [40] |
COG6 | rs7993214 | C | T(G) | 0.57 | 0.62 | 0.657 | [40] |
SDC4 | rs1008953 | C | T | 0.86 | 0.72 | 0.775 | [41] |
RPS26 | rs12580100 | A | G | 0.93 | 0.85 | 0.867 | [41] |
NONE | rs1975974 | A | G | 0.82 | 0.77 | 0.763 | [41] |
LCE3D | rs4112788 | G | A | 0.68 | 0.62 | 0.644 | [8] |
LOC105376976 | rs6809854 | A | G | 0.64 | 0.77 | 0.802 | [41] |
LOC107984144 | rs10484554 | C | T | 0.68 | 0.60 | 0.857 | [40] |