| αCGL | cholesteryl α-glucoside |
| αCgT | cholesteryl α-glucosyltransferase |
| AlpA | adherence-associated lipoprotein A |
| AlpB | adherence-associated lipoprotein B |
| AmiE and AmiF | aliphatic amidases—E and F |
| ASPP2 | apoptosis-stimulating protein of p53 2 |
| BabA | blood group antigen binding fadhesin |
| cagPAI | cag pathogenicity island |
| CEACAM | carcinoembryonic antigen-related cell adhesion molecules |
| Cu/Zn-SOD | copper-zinc superoxide dismutase |
| CXCR7 | CXC chemokine receptor 7 |
| Dps | DNA-protecting protein under severe conditions |
| DupA | duodenal ulcer promoting gene A |
| EC-SOD | extracellular matrix superoxide dismutase |
| EMT | epithelial-mesenchymal transition |
| GC | gastric cancer |
| GGT | γ-glutamyl-transpeptidase |
| GERD | gastroesophageal reflux disease |
| GSK-3 | glycogen synthase kinase 3 |
| H. pylori | Helicobacter pylori |
| HopQ | Helicobacter pylori outer membrane protein Q |
| HopZ | Helicobacter pylori outer membrane protein Z |
| Hsps | heat shock proteins |
| HtrA | high temperature requirement A |
| IBD | inflammatory bowel disease |
| IceA | induced by contact with epithelium gene A |
| iNOS | nitric oxide synthase |
| LabA | LacdiNAc-specific adhesin |
| (Le) antigens | Lewis antigens |
| LPS | lipopolysaccharide |
| LRP-1 | lipoprotein receptor-related protein-1 |
| MALT | mucosa-associated lymphoid tissue lymphoma |
| MAP | mitogen-activated protein |
| MAPK | mitogen-activated protein kinase |
| MD-2 | myeloid differential protein-2 |
| MHC | major histocompatibility complex |
| MMP-1 | matrix metalloproteinase 1 |
| Mn-SOD | manganese superoxide dismutase |
| Mox1 | mitogen oxidase 1 |
| NAP | neutrophil-activating protein |
| NUD | non-ulcer dyspepsia |
| OipA | outer inflammatory protein A |
| OMP | outer membrane protein |
| OMPLA | outer membrane phospholipase A |
| OMVs | outer membrane vesicles |
| PAI-2 | plasminogen activator inhibitor-2 |
| PD-1 | programmed death-ligand 1 |
| PDCD4 | programmed cell death protein 4 |
| PLA1 | phospholipase A1 |
| PLA2 | phospholipase A2 |
| PLC | phospholipase C |
| PLC–IP3 | phospholipase C – inositol 1,4,5-trisphosphate |
| PLD | phospholipase D |
| ROS | reactive oxygen species |
| RPTPα | receptor-like protein tyrosine phosphatases β |
| RPTPβ | receptor-like protein tyrosine phosphatases α |
| RUNX3 | run-related transcription factor 3 |
| SabA | sialic acid–binding adhesin |
| SOD | superoxide dismutase |
| T4SS | type 4 secretion system |
| TF | tissue factor |
| TFF | trefoil factor family |
| TGF-β1 | transforming growth factor-beta 1 |
| TLR4 | toll-like receptor 4 |
| TNF-α | tumor necrosis factor alpha |
| VacA | vacuolating cytotoxin |
| Vn | vitronectin |
| WHO | World Health Organization |
| YAP | yes-associated protein |