Table 1.
Gene | Region | Sequence | Tm °C | Base Pairs (amplicon) | Reference |
---|---|---|---|---|---|
16S rRNA | F-5′CTCGAGAGACTAAGCCCTCC-3′ R-5′ATTACTGACGCTGATGTGC-3′ |
53 | 110 | [5] | |
cagA | F-5′GATAACAGGCAAGCTTTTGAGG-3′ R-5′CTGCAAAAGATTGTTTGGCAGA-3′ |
55 | 349 | [32] | |
vacA | s1a | F-5′-GTCAGCATCACACCGCAA-3′ R-5′-CTGCTTGAATGCGCCAAAC-3′ |
55 | 190 | [33] |
vacA | s1b | F-5′AGCGCCATACCGCAAGAG-3′ R-5′-CTGCTTGAATGCGCCAAAC-3′ |
55 | 187 | [33] |
vacA | s2 | F-5′-GCTAACACGCCAAATGATCC-3′ R-5′-CTGCTTGAATGCGCCAAAC-3′ |
55 | 199 | [33] |
vacA | m1 | F-5′-GGTCAAAATGCGGTCATGG-3′ R-5′-CCATTGGTACCTGTAGAAAC-3′ |
50 | 290 | [33] |
vacA | m2 | F-5′-GGAGCCCCAGGAAACATTG-3′ R-5′-CATAACTAGCGCCTTGCAC-3′ |
55 | 352 | [33] |
dupA | F-5′-ACAAGGACGATTGAGCGATGG-3′ R-5′-TGGCTAGTTTGAGGTCTTAGG-3′ |
61 | 515 | [5] |