IR	Inverted repeat
DR	Direct repeat
SC	Single-copy
LSC	Long single-copy
SSC	Short single-copy
NCBI	National Center for Biotechnology Information
WGS	Whole genome sequencing
PCR	Polymerase Chain Reaction
SNP	Single Nucleotide Polymorphisms
InDels	Insertions/deletions
mya	Million years ago
CTAB	Cetyltrimethylammonium bromide
dnaLCW	De novo assembly of Low-Coverage Whole genome sequence
CDS	Coding sequence
tRNA	Transfer RNA
rRNA	Ribosomal RNA
HPD	Highest Posterior Density
GTR	General Time-Reversible