Table 1.
MinION sequencing experiments downloaded from Genbank’s SRA in FASTQ format and used for software benchmarking
| Genbanks SRA Id. | Organism | File size (GB) | Unique k-mers (%) |
|---|---|---|---|
| ERR2900440 | Fermentation M | 0.02 | 53 |
| ERR2900442 | Fermentation M | 0.04 | 49 |
| ERR2900428 | Fermentation M | 0.25 | 35 |
| DRR164915 | Leptotrichia trevisanii | 0.28 | 83 |
| SRR7765365 | Acanthamoeba castellanii | 0.68 | 99 |
| ERR2625614 | Marine V | 0.72 | 57 |
| SRR6037114 | Food M | 1.85 | 42 |
| SRR6037129 | Food M | 2.64 | 31 |
| ERR2564376 | Brassica oleracea | 4.01 | 91 |
| ERR2571299 | Musa schizocarpa | 6.11 | 91 |
| ERR2662964 | Sludge M | 13.23 | 94 |
| SRR5889392 | Oryza coarctata | 13.51 | 97 |
| SRR7762336 | Phaeodactylum tricornutum | 15.10 | 85 |
| ERR2612749 | Magnaporthe oryzae | 16.37 | 81 |
Note: Species with name in italic have a reference genome available.