MSC	Mesenchymal stromal cell
RNAseq	RNA high throughput sequencing
GO	Gene ontology
LPS	Lipopolysaccharide
D10	Baseline medium for MSC (DMEM + fetal bovine serum + gentamycin)
Pol1	Pro-inflammatory polarization medium for macrophages
M0CM	Conditioned medium from non-polarized macrophages (M0)
M1CM	Conditioned medium from pro-inflammatory macrophages (M1)
IFNγ	Interferon gamma
FACS	Fluorescence activated cell sorting
P2, P4	Passage 2 or 4
CM	Conditioned medium
PDL	Poly-(D)-Lysine
FPKM	Fragments Per Kilobase of transcript sequence per Millions base pairs sequenced
DEG	Differentially expressed gene
DE	Differential expression
BP	Biological process
MAPK	Mitogen activated protein kinase
hif1α	Hypoxia inducible factor 1 subunit alpha
nfkb1	Nuclear factor kappa B subunit 1
nfkbiz	Nuclear factor kappa B inhibitor zeta
hgf, HGF	Hepatocyte growth factor
ngf, NGF	Nerve growth factor
ido1	Indoleamine 2,3-dioxygenase 1
irfs	Interferon regulatory factors
DAG	Directed acyclic graph
p(adj)	p-value adjusted for multiple testing
CC	Cellular component
MF	Molecular function
MHC	Major histocompatibility complex
KEGG	Kyoto Encyclopedia of Genes and Genomes
RF	Rich factor
TNF	Tumor necrosis factor
Gdnf, GDNF	Glial derived neurotrophic factor
Vegf, VEGF	Vascular endothelial growth factor
bcl2	B cell lymphoma 2
JAK	Janus kinase
STAT	Signal transducer and activator of transcription
ELISA	Enzyme-linked immunosorbent assay
nos2	Nitric oxide synthase 2
il13r	Interleukin 13 receptor
ptgs2	Prostaglandin synthase 2
ang-1	Angiopoietin 1
egf	Endothelial growth factor
IGF	Insulin like growth factor
FGF	Fibroblast growth factor
bmp	Bone morphogenetic protein
wnt	Wingless-Int-1 protein family
PGE2	Prostaglandin E2
QC	Quality control
GEO	Gene expression omnibus