H. pylori	Helicobacter pylori
WHO	World Health Organization
Myd88 −/−	Myeloid differentiation primary response 88- deficient
H. felis	Helicobacter felis
TRIF	Toll/IL-1R (TIR) domain-containing adaptor-inducing interferon-β
Trif Lps2	TRIF deficient
WT	Wild Type
DKO	double knockout
BHI	Brain Heart Infusion
QIIME2	Quantitative Insights into Microbial Ecology
TIR	Toll/interleukin-1 receptor
SEPP	SATé-enabled phylogenetic placement
OTU	Operational taxonomic unit
ROC	Receiver operating characteristic
FDR	False-discovery rate
INS-GAS	insulin-gastrin
IFN	interferon