Table 3.
The best peptides according to their binding energy with SARS-COV-2 Spike protein.
| peptide code | peptide name | microorganism | sequence | dock score (kcal/mol) |
|---|---|---|---|---|
| 2MVI | Bacteriocin plantaricin ASM1 | Lactobacillus plantarum | KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGVKHSSGGGGSYHC | −149.7 ± 3.2 |
| 2JPK | Bacteriocin lactococcin-G subunit beta | Lactococcus lactis subsp. lactis | KKWGWLAWVDPAYEFIKGFGKGAIKEGNKDKWKNI | −143.7 ± 3.5 |
| 2LJ7 | Defensin Lc-def | Lens culinaris subsp. culinaris | KTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWCTRNC | −143.0 ± 1.4 |
| 2LG5 | Gallinacin-2 | Gallus gallus | LFCKGGSCHFGGCPSHLIKVGSCFGFRSCCKWPWNA | −140.4 ± 4.8 |
| 2KUY | Bacteriocin glycocin F | Lactobacillus Plantarum | KPAWCWYTLAMCGAGYDSGTCDYMYSHCFGIKHHSSGSSSYHC | −139.0 ± 6.5 |
| 1H5O | Crotamine | Crotalus durissus terrificus | YKQCHKKGGHCFPKEKICLPPSSDFGKMDCRWRWKCCKKGSG | −137.8 ± 6.5 |
| 2RU0 | Actinomycin | Actinomyces sp. oral taxon 171 str. F0337 | GFGCPWNAYECDRHCVSKGYTGGNCRGKIRQTCHCY | −133.1 ± 7.4 |
| 1Z64 | Pleurocidin | Pseudopleuronectes americanus | GWGSFFKKAAHVGKHVGKAALTHYL | −130.9 ± 2.5 |