Table 2.

Events performed for the detection of SNPs in rapeseed

No. of genotype used	Sequencing method	SNP calling tool	No. of SNPs	References
2	Solexa sequencing Illumina	MAQ	23,330–41,593	112
8	Illumina GAIIx system	RADtags	20,835	113
84	Illumina mRNA-Seq	Trinity	101,644	114
4	Illumina GoldenGate assay and Illumina Infinium	MIRA	5764	115
4	Illumina Infinium™ 6 K	SGSAutoSNP	5306	116
52	Illumina HiSeq 2000 platform	FaSD, Freebayes and SAMtools	4.3 Million	117
437	Brassica 60 K Illumina Infinium array	CLC Genomics Server	52,157	118