TABLE 1.
Study | Category of patients | City/Country | Number of patients | Methodology | Pathways analysis |
Diez-Fraile et al., 2014 | AMA | Ghent, Belgium | 21 | miRNA extraction using a silica-gel-based membrane purification method. RT-qPCR was performed and further validation of the results was conducted. | miRNA predicted targets and KEGG pathway analysis was evaluated employing the Mirpath bioinformatics tool available on the DIANA LAB website. |
Moreno et al., 2015 | AMA | Valencia, Spain | 30 | Presence, proportion and quality of miRNAs were assessed with small RNA LabChips and BioAnalyzer. miRNAs Microarray analysis was performed to compare the miRNA profiles. RT-qPCR was employed to confirm the results from the pooled microarrays. | Diana-miRPath was employed to perform pathways analysis. |
Chen et al., 2015 | POF | Changsha, China | 6 | Total RNA extraction was performed with TRIzol reagent and was subsequently reverse transcribed using RevertAid First Strand cDNA synthesis kit. | TargetScan and micrRNA website were employed to detect targeted genes. No pathway analysis was further performed. |
Luo et al., 2019 | POR | Tianjin, China | 7 | RNA extraction was performed and integrity of RNA was assessed. High-throughput RNA sequencing was performed. HiSeq results were annotated and classified in GenBank database. miRbase was employed to identify known miRNAs, while novel miRNAs were identified with Mireap software. | miRanda and TargetScan software were implemented to predict target genes, which were then annotated with GO and KEGG database. |
Zhang K. et al., 2017 | POR | Shanghai, China | 30 | RNA extraction was performed and RNA quality was checked. RNA was then purified and further validated with electrophoresis. miRNA sequencing was performed. cDNA libraries were prepared. The EB-Seq algorithm was applied to identify differentially expressed genes. Verification of miRNA and mRNA expression was conducted | Targetscan was implemented to predict miRNA targets. GO analysis was performed. Pathways analysis according to KEGG database was utilized to identify significant pathways. Additional miRNA-mRNA network analysis was performed. |
miRNA, microRNA; RT-qPCR, Quantitative reverse transcription PCR; cDNA, complementary DNA; mRNA, messenger RNA; KEGG, Kyoto Encyclopedia of Genes and Genomes; GO, Gene Ontology.