Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

[Preprint]. 2021 Jan 20:2021.01.19.427330. [Version 1] doi: 10.1101/2021.01.19.427330

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License, which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format for noncommercial purposes only, and only so long as attribution is given to the creator.

PMC Copyright notice

Figure 3. — SARS-CoV-2 intrahost single nucleotide variant (iSNV) diversity. (A) Sequencing coverage for clinical samples. The number of clinical samples (y-axis) is shown by the fraction of the genome above a given read depth threshold (x-axis). The different lines show the data evaluated with six read depth thresholds. (B) Histogram of the number of specimens (y-axis) by the number of minor iSNV per sample (x-axis), n = 178. (C) Number of minor iSNV by frequency with a bin width of 0.05. Non-synonymous iSNV are shown in orange and synonymous iSNV are shown in violet. (D) Number of minor iSNV by coding region. Non-synonymous iSNV are shown in orange and synonymous iSNV are shown in violet. (E) Scatterplot of the number of minor iSNV per sample (y-axis) by the day post symptom onset (x-axis). Hospitalized patients are shown in teal and employees shown in violet. The four samples with > 15 iSNV shown in (B) are excluded from the plot for visualization.