Antibodies |
Mouse monoclonal anti-BTG2 |
Santa Cruz |
Cat#sc-517187 |
Rabbit monoclonal anti-CCND2 |
Novus Biologicals |
Cat# NBP2-14460 |
Mouse monoclonal anti-CD31 |
Abcam |
Cat#ab187377, RRID:AB_2756834; lot#GR317844-4 |
Rabbit monoclonal anti-Cleaved-Caspase 3 |
Cell Signaling Technology |
Cat#9664, RRID: AB_10891784‘ |
Rabbit monoclonal anti-Cleaved-PARP |
Cell Signaling Technology |
Cat#5625S, RRID: AB_10699459; lot#13 |
Rabbit polyclonal anti-FBXW7 |
Abcam |
Cat#ab109617; RRID:AB_2687519; lot#GR190912-1 |
Mouse monoclonal anti-Flag |
Sigma-Aldrich |
Cat#F1804, RRID: AB_262044 |
Mouse monoclonal anti-GAPDH |
Santa Cruz |
Cat# sc-47724, RRID:AB_627678; lot#F2216 |
Rabbit polyclonal anti-GFAP |
Agilent |
Cat#Z0334, RRID:AB_10013382; lot#00085136 |
Mouse monoclonal Human Nuclei antibody |
Millipore |
Cat#MAB1281, RRID:AB_94090; lot#3129247 |
Rabbit polyclonal anti-MCL1 |
Santa Cruz |
Cat# sc-819; RRID:AB_2144105 |
Mouse monoclonal anti-Nestin |
BD Biosciences |
Cat# 611658, RRID:AB_399176; lot#13748 |
Mouse monoclonal anti-Olig2 |
Millipore |
Cat# MABN50, RRID:AB_10807410; lot#3109744 |
Rabbit polyclonal anti-p27 |
Cell Signaling Technology |
Cat# 2552, RRID:AB_10693314; lot#7 |
Rabbit polyclonal anti-Piwil1 |
Abcam |
Cat#ab12337; RRID:AB_470241; lot#GR312421-1 |
Mouse monoclonal anti-Sox2 |
Millipore |
Cat#MAB4423, RRID: AB_11213224; lot#3112625 |
Mouse monoclonal anti-α-Tubulin |
Sigma-Aldrich |
Cat# T6199, RRID:AB_477583 |
Biological Samples |
GBM specimens |
Cleveland Clinic Brain Tumor Bank |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
EGF |
R&D |
Cat#236-EG |
FGF |
R&D |
Cat#4114-TC |
Actinomycin D |
Invitrogen |
Cat#A7592 |
Critical Commercial Assays |
Cell Titer-Glo |
Promega |
Cat#G7572 |
Mouse and Rabbit Specific HRP/AEC IHC Detection Kit |
Abcam |
Cat#236467 |
Senescence β-Galactosidase Staining Kit |
Cell Signaling Technology |
Cat#9860S |
Click-iT EdU Imaging Kits |
Thermo Fisher |
Cat#C10338
|
Transwell polycarbonate membrane cell culture inserts |
Corning |
Cat#3422 |
SuperScript IV VILO Master Mix |
Thermo Fisher |
Cat# 11756050 |
PowerUp SYBR Green Master Mix |
Thermo Fisher |
Cat#A25742 |
Deposited Data |
Raw and analyzed data |
This paper |
GEO: GSE160437
|
Experimental Models: Cell Lines |
293T |
ATCC |
Cat# CRL-3216, RRID:CVCL_0063 |
4121 |
Gifts from Dr. Jeremy Rich |
N/A |
3832 |
Gifts from Dr. Jeremy Rich |
N/A |
387 |
Gifts from Dr. Jeremy Rich |
N/A |
3359 |
Gifts from Dr. Jeremy Rich |
N/A |
Experimental Models: Organisms/Strains |
NSG mice |
The Jackson Laboratory |
Cat# 005557 |
Oligonucleotides |
qPCR primers, see Table S1
|
This paper |
N/A |
Recombinant DNA |
pCDH-MCS-T2A-Puro-MSCV lentiviral vector |
System Biosciences |
Cat#CD522A-1 |
pCDH-EF1 α-MCS-IRES-neo lentiviral vector |
System Biosciences |
Cat#CD532A-2 |
pMSCV-Flag-Piwil1 |
This paper |
N/A |
pEF1 α-Flag-MCL1 |
This paper |
N/A |
pEF1 α-Flag-OLIG2 |
This paper |
N/A |
pEF1 α-Flag-CCND2 |
This paper |
N/A |
shRNA human pLKO.1 CTRL shRNA |
Sigma-Aldrich |
Cat# SHC002 |
shRNA human pLKO.1 Piwil1 shRNA#1 |
Sigma-Aldrich |
TRCN0000417558 |
shRNA human pLKO.1 Piwil1 shRNA#2 |
Sigma-Aldrich |
TRCN0000007878 |
Software and Algorithms |
GraphPad Prism 8 |
GraphPad Software |
RRID:SCR_002798; https://www.graphpad.com/
|
ImageJ |
Schneider et al., 2012 |
RRID:SCR_003070; https://imagej.nih.gov/ij/
|
ELDA |
Hu and Smyth, 2009 |
RRID:SCR_018933; http://bioinf.wehi.edu.au/software/elda/
|
Modfit LT |
Verify Software House |
RRID:SCR_016106; http://www.vsh.com/products/mflt/
|
R Bioconductor package: Beadarray 2.36.1 |
Dunning et al., 2007 |
RRID:SCR_001314; https://bioconductor.org/packages/release/bioc/html/beadarray.html
|
R Bioconductor package: clusterProfiler 3.14.3 |
Yu et al., 2012 |
RRID:SCR_016884; https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html
|
R Bioconductor package: limma 3.42.2 |
Ritchie et al., 2015 |
RRID:SCR_010943; https://bioconductor.org/packages/release/bioc/html/limma.html
|