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. 2021 Jan 26;104:107851. doi: 10.1016/j.jmgm.2021.107851

Table 1.

The Glide Energies (kcal/mol) and structures of the top compounds are provided, as well as details about the inter-atomic contacts formed. Refined selection of potential lead compounds.

Compounds and Glide Energies Structures Inter-atomic contacts
α-ketoamide 13b:
−60.3 kcal/mol
Image 2
  • H-bonds: K157, L162 and E167

GRL-0617:
−38.2 kcal/mol
Image 3
  • H-bonds: Y264 and Q269

  • π-π interaction: Y264

(−)-Epigallocatechin gallate:
−56.4 kcal/mol
Image 4
  • H-bonds: Y273, E161, D164 and E167

Cyanidin-3-O-glucoside:
−59.2 kcal/mol
Image 5
  • H-bonds: T301, Y273, G271, Q269, G163 and E167

Rutin:
−59.9 kcal/mol
Image 6
  • H-bonds: G271, Y268, Y264, G163, E161, D164 and T301

  • π-π cations: K157

Cefotaxime:
−41.6 kcal/mol
Image 7
  • H-bonds: G271, L162 and K157

  • π-π interaction: Y264

  • Salt bridge: K157

Amikacin:
−50.1 kcal/mol
Image 8
  • H-bonds: K157, E161, Y264, G163, Q269, D164, E167 and Y273

  • Salt bridges: E161, E167 and D164

Doripenem:
−44.9 kcal/mol
Image 9
  • H-bonds: Q269 and D164

  • π-π cation: Y264

  • Salt bridge: D164

Saquinavir:
−47.2 kcal/mol
Image 10
  • H-bonds: E167 and K157

  • π-π cation: K157

  • π-π interaction: Y264

SRT1720:
−44.3 kcal/mol
Image 1
  • H-bonds: Y264

  • Salt bridge: E167

Hypericin:
−38.0 kcal/mol
Image 1
  • H-bonds: L162, G163, Y264 and E167

  • π−π cation: R166

Hypericin isomer:
−38.0 kcal/mol
Image 1
  • H-bonds: G163 and Y273

  • π−π interaction: Y268