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. 2021 Jan 26;4:117. doi: 10.1038/s42003-020-01626-5

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 1 — The color bars at the top of the heatmap identify the phylogroups as predicted from the analysis. The scale to the left of the dendrogram corresponds to the resultant cluster height of the entire dataset obtained from hclust function in R. The colors in the heatmap are based on the pairwise Mash distances. Shades of teal represent similarity between genomes, with the darkest teal corresponding to identical genomes reporting a Mash distance of 0. Shades of brown represent low genetic similarity per Mash distance, with the darkest brown indicating a maximum distance of ~0.039. Genomes of relative median genetic similarity have the lightest color.