TABLE 2.
Genomic loci associated with metabolites and metabolite ratios at genome‐wide significance in meta‐analysis
Locus | rsID | Metabolite/ratio a | Annotation b | Ref c | N | EA/OA d | Beta (SE e ) | p f |
---|---|---|---|---|---|---|---|---|
LINC02267 | rs117445861 | Hypoxanthine | RINT | NAS | 1551 | A/G | −0.54 (0.08) | 5.9E‐11 |
RHPN1 | rs73365860 | L‐Histidine/uric acid | DS | NL | 1513 | T/C | −0.17 (0.02) | 3.3E‐12 |
FADS1 | rs174548 | cis‐5,8,11,14,17‐Eicosapentaenoic acid (C20:5n3)/LysoPC 20:2 | INT | NAS | 1551 | C/G | −0.12 (0.02) | 1.3E‐12 |
ZBTB16 | rs573195 | Inosine | INT | NL | 1499 | T/G | −0.52 (0.08) | 1.2E‐11 |
ACADS | rs9204 | 2‐Methylsuccinic acid | UTR3 | NAS | 1551 | A/G | 0.37 (0.04) | 3.4E‐20 |
LOC112268121 | rs9530695 | Eudesmic acid | IG | NL | 1506 | C/G | 2.50 (0.32) | 6.1E‐15 |
ERH | rs76199614 | Glycochenodeoxycholic acid | DS | NAS | 1515 | A/G | 0.29 (0.04) | 1.2E‐10 |
SLC10A1 | rs2296651 | Glycocholic acid | MV | NL | 1551 | A/G | −1.31 (0.08) | 4.2E‐63 |
GABRG3 | rs58275387 | Dodecanedioic aicd | INT | NL | 1542 | T/C | −0.34 (0.05) | 2.6E‐10 |
ACSM5 | rs9929808 | 3‐Indolepropionic acid | INT | NAS | 1551 | T/C | −0.77 (0.07) | 2.1E‐32 |
rs6497488 | 3‐Indolepropionic acid | INT | NAS | 1500 | T/C | −0.40 (0.06) | 5.6E‐11 | |
ACSM2B | rs11645661 | 3‐Indolepropionic acid | UTR3 | NL | 1548 | A/G | −0.69 (0.07) | 3.7E‐22 |
TBX4 | rs8073361 | Eudesmic acid | IG | NAS | 1551 | A/C | −1.97 (0.30) | 8.8E‐11 |
PWP2 | rs74716564 | 1,4‐dihydro‐1‐Methyl‐4‐oxo‐3‐pyridinecarboxamide | INT | NL | 1525 | A/G | −0.47 (0.07) | 6.4E‐11 |
The “/” represents a ratio relationship, the front is the numerator, the back is the denominator.
SNP annotation, UTR3 (3′ Untranslated Region), DS (downstream), IG (intergenic), INT (Intronic), MV (Missense Variant), RINT (ncRNA_intronic).
Novel Locus (NL) or Novel Association (NAS).
Effect/other allele.
Standard error.
Meta‐analysis p‐value.