Table 1.
Calmodulin Prediction Comparison to Phenotype Prediction Software
| MDPPM |
PON-P |
CONDEL |
predictSNP |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Variant | Phenotype Prediction | PON-P | SIFT | PPH2 | MA | FATHMM | CONDEL | predictSNP | PhD-SNP | PolyPhen-1 | PolyPhen-2 | SIFT | SNAP |
| A21G | AD1b | 0.845a | 0.420d | 0.978b | 0.805b | −4.910d | 0.561b | 75%d | 83%d | 67%d | 61%d | 76%d | 56%b |
| A42T | AD1b | 0.949b | 0.000b | 1.000b | 1.040b | −4.910d | 0.570b | 60%d | 51%d | 67%d | 68%d | 53%b | 81%b |
| D7N | AD1b | 0.950b | 1.000d | 0.336c | 0.345d | −4.090d | 0.519d | 72%b | 55%d | 59%b | 63%b | 79%b | 85%b |
| E22G | AD1b | 0.937b | 0.010b | 0.912b | 0.975b | −4.930d | 0.568b | 51%b | 61%b | 67%d | 41%b | 53%d | 72%b |
| D23N | CAAb | 0.791a | 0.230d | 0.984b | 0.975b | −5.110d | 0.573b | 87%b | 59%b | 74%b | 60%b | 53%b | 81%b |
| E22K | CAAb | 0.895b | 0.010b | 0.460c | 0.625d | −4.910d | 0.552b | 87%b | 61%b | 59%b | 60%b | 45%b | 89%b |
| E22Q | CAAb | 0.956b | 0.010b | 0.936b | 0.975b | −4.920d | 0.568b | 61%b | 51%d | 67%d | 81%b | 79%b | 89%b |
| L34V | CAAb | 0.885b | 0.000b | 0.999b | 1.040b | −4.990d | 0.572b | 76%b | 51%d | 74%b | 68%b | 79%b | 62%b |
| E3D | WTd | 0.861b | 0.150d | 0.015d | 0.975b | −4.870d | 0.566b | 71%d | 72%d | 67%d | 68%d | 79%b | 58%d |
| E22D | WTd | 0.938b | 0.150d | 0.015d | 0.975b | −4.870d | 0.566b | 75%d | 66%d | 67%d | 63%d | 67%d | 56%b |
| Pearson | −0.726 | 0.395 | 0.268 | −0.258 | −0.267 | 0.448 | −0.362 | 0.007 | −0.380 | −0.123 | 0.673 | 0.823 | 0.067 |
| Accuracy | 100.0% | 60.0% | 70.0% | 80.0% | 60.0% | 0.0% | 70.0% | 60.0% | 30.0% | 40.0% | 60.0% | 60.0% | 80.0% |
Unknown.
Deleterious/pathological.
Possible damage.
Neutral/nonpathological.