Table 1.
RNA-Seq data sets used in this study.
| ID* | Time point | Host cells | Condition |
|---|---|---|---|
| C. parvum | |||
| 1B | Oocyst | NA | Extracellular |
| 2D | Oocyst | NA | Extracellular |
| 3A | 0 h | NA | Extracellular |
| 4A | 0 h | NA | Extracellular |
| 5A | 0 h | NA | Extracellular |
| 6A | 0 h | NA | Extracellular |
| 7A | 0 h | NA | Extracellular |
| 8A | 0 h | NA | Extracellular |
| 9A | 0 h | NA | Extracellular |
| 10A | 2 h | NA | Extracellular |
| 11A | 2 h | NA | Extracellular |
| 12A | 2 h | NA | Extracellular |
| 13A | 2 h | NA | Extracellular |
| 14A | 2 h | NA | Extracellular |
| 15A | 2 h | NA | Extracellular |
| 16A | 2 h | NA | Extracellular |
| 17A | 2 h | NA | Extracellular |
| 18A | 2 h | NA | Extracellular |
| 19A | 2 h | NA | Extracellular |
| 20D | 24 h | HCT-8 | Intracellular |
| 21D | 24 h | HCT-8 | Intracellular |
| 22D | 24 h | HCT-8 | Intracellular |
| 23B | 24 h | IPEC | Intracellular |
| 24B | 24 h | IPEC | Intracellular |
| 25B | 24 h | IPEC | Intracellular |
| 26B | 24 h | IPEC | Intracellular |
| 27C | 48 h | MDBK | Intracellular |
| 28C | 48 h | MDBK | Intracellular |
| 29C | 48 h | MDBK | Intracellular |
| 30C | 48 h | MDBK | Intracellular |
| 31D | 48 h | HCT-8 | Intracellular |
| 32D | 48 h | HCT-8 | Intracellular |
| 33D | 48 h | HCT-8 | Intracellular |
| C. hominis | |||
| 34E | Oocyst | NA | Extracellular |
| 35E | Oocyst | NA | Extracellular |
| 36F | Oocyst | NA | Extracellular |
| 37F | Oocyst | NA | Extracellular |
| C. baileyi | |||
| 38G | Oocyst/sporozoite | NA | Extracellular |
*Batch with various host cell types and parasites from different projects are indicated with the sample IDs. IDs designated with A, C and E, (Matos et al., 2019); B, (Mirhashemi et al., 2018); D, (Tandel et al., 2019); 36F: SRR1183950; 37F: SRR1183934; 38G: SRR1183952.
Cell line synonyms/origin: HCT-8: Human intestine; IPEC: Intestinal Porcine Epithelial Cell line; MDBK: Bovine kidney.