. 2021 Jan 14;11:605738. doi: 10.3389/fmicb.2020.605738

TABLE 1.

Prediction of subcellular localization of CgPTPM1 in C. graminicola.

Predicted by Neural nets: Mitochondrial with score: 1.08. Predicted by Pentamers: Mitochondrial with score: 1.2. Integral Prediction of protein location: Mitochondrial with score: 5.6.

Location weights:	LocDB	PotLocDB	Neural nets	Pentamers	Integral
Nuclear	0.0	0.0	0.40	0.0	0.31
Plasma membrane	0.0	0.0	0.34	0.21	1.97
Extracellular	0.0	0.0	0.26	0.35	1.16
Cytoplasmic	0.0	0.0	0.24	0.06	0.29
Mitochondrial	0.0	0.0	1.08	1.2	5.60
Endoplasm. retic.	0.0	0.0	0.28	0.02	0.17
Peroxisomal	0.0	0.0	0.02	0.09	0.00
Lysosomal	0.0	0.0	0.09	0.02	0.00
Golgi	0.0	0.0	0.00	1.08	0.36
Vacuolar	0.0	0.0	0.29	0.05	0.13

LocDB: scores based on query protein’s homologies with proteins of known localization.

PotLocDB: scores based on homologies with proteins which locations are not experimentally known but are assumed from strong theoretical evidence.

NNets: scores assigned by neural networks.

Pentamers: scores based on comparisons of pentamer distributions calculated for QUERY and DB sequences.

Integral are final scores that combine all above previous scores using a final neural net.