Table 2.
List of output parameters from RunNetworkAnalysis.m script and brief descriptions
| Data | Variable name or location | Brief description | |
|---|---|---|---|
| ROI/node-based | CalciumEventsTable | timing of calcium peaks in each ROI (s) | |
| ISITable | inter-spike intervals (ISI) per ROI (s) | ||
| SingleParameterTable | AverageFrequency | average calcium event frequency (events/min) of the sample | |
| PercentageActiveROI | percentage of ROIs with at least one Ca2+ event | ||
| SyncIndex | global synchronization index | ||
| NodeDegree | NodeIndex | index of each ROI | |
| Degree | node degree of each ROI | ||
| Network-based | FinalTableNetworkData | N | number of nodes (ROIs) |
| Modularity | modularity value | ||
| NumberModules | number of modules | ||
| AverageEdgeWeight | average edge weight | ||
| AverageClusteringCoef | average clustering coefficient | ||
| AveragePathLength | average path length | ||
| ModulesComposition | (First column) | module index | |
| (Second Column) | number of ROIs in the module | ||
| (Third Column) | index of the ROIs per module | ||
| Node’s degree distribution | kernel density distribution of the node degree | ||
| Circular Graph | functional connectivity graph | ||