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Analysis of the MD simulation on the system consisting of a 4 + 4 bilayer β-sheet and two random chains in conventional MD simulations. The time evolution of (a) backbone H-bond number, the minimum distance between chain 1 and 4 + 4 bilayer β-sheet, and the main-chain distance between chain 1 and chain 2. (b) Backbone H-bond number and the minimum distance between chain 2 and chain 8. (c) Representative snapshots at 12 different time points.
