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. 2020 Nov 12;134(2):529–542. doi: 10.1007/s00122-020-03712-y

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — Gene contents, NLR phylogeny and resistance gene transcription patterns. a Conserved gene orders for 2 N genes compared to 2A, 2B, 2D genes. Outer layer line plot track indicates gene density (count 1–5) per 100 kb region; labeled track are chromosomes with 2N^vS filled with green color; inner tracks show positions of AHRD annotated cytochrome P450 (light blue) and NLR genes based on NLR-Annotator (black) and AHRD annotation (red). Links connecting orthologous genes between 2 N (green) and common wheat chromosomes (no fill color). b Phylogenetic relationships of 2N^vS NLR genes compared to Chinese Spring 2AS NLRs. C (red) denotes Chinese Spring, and J (blue) denotes Jagger genes. c Hierarchical clustering of resistance gene expression patterns. Tissue types are: early leaf (EL); leaf (L); late leaf (LL); root (R); crown (C); young head (YH); and single floret from a young head (FLORET). Tissue growth stages are: pre-vernalization (pre); 4th week of vernalization (V4); 8th week of vernalization (V8); 1 week post-vernalization (post); and heading (heading)