TABLE 4.
Names | Equations |
---|---|
Transition rates | |
α11+ and α11n | α11 |
α12+ and α12n | α12 |
β11+ and β11n | β11 |
β12+ and β12n | β12 |
αx+ | 9.72e-5×αx |
βx+ | 2.85e-8×βx |
α13+ | 1.29e-3×α13 |
α2+ | 2.93e3×α2 |
β3+ | 8.23e-9×β3 |
α3+ | 3.43e-7×α3 |
α4+ | 3.24×α2 |
β4+ | 3.27e-1×α3 |
αxn | 1.54e-1×αx |
α13n | 2.49×α13 |
α2n | 4.03e1×α2 |
β3n | 7.07×β3 |
α4n | 1.12e-3×α2 |
β4n | 4.30e-3×α3 |
Affinities | |
k_on = kc_on | drug_charged×diffusion |
k_off = kc_off | 2.15e1×(1e-6)×exp((−0.7×V×F)/(R×T))×diffusion |
kb_on = kcb_on | k_on |
kb_off = kcb_off | 8.07e-1×(1e-6)×exp((−0.7×V×F)/(R×T))×diffusion |
kn_on | drug_neutral×diffusion |
kn_off | 400×(1e-6)×diffusion |
kni_on | kn_on |
kni_off | 5.4×(1e-6)×diffusion |
knc_on | kn_on |
knc_off | 800×(1e-6)×diffusion |
Diffusion | 5500 M−1 m−1 |
The first column indicates transition rate names while the second column indicates their corresponding equations. The top section of the table defines drug transition rates, which are analogous to their respective wild type counterparts. The bottom section of the table defines drug-channel affinities. Nomenclature for transition rates and affinities: charged drug (+), neutral drug (n), closed states (c), inactivated states (i), bursting states (b), drug binding to the channel (on), drug unbinding from the channel (off).