Table 1. Origin and processing results from specimens for KSHV genome analysis.

Pt ID	Age	Sex	Plasma HIV RNA (copies/mL)	CD4 T cells /μL	Sample ID	Sample Type	% on-target		Median read coverage	Standard Deviation	Median dUMI-consensus read coverage	Standard Deviation	Genome length (excluding masked repeats)	# positions with variants	Mean frequency of variant base	Genbank Accession
							Pre-enrichment	Post-enrichment
n/a	n/a	n/a	n/a	n/a	BCBL-1	cell line	0.0009%	15.61%	16,805	1,858	302	52.49	132,676	81	1.35%	MT936340
U003	25	M	759,635	45	U003-C	Tumor	0.0037%	7.15%	16,265	1,715	270	30.47	131,292	21	1.80%	MT510648
					U003-o1	Oral swab	0.0000%	35.20%	49,598	26,446	7	6.22	131,102	12	-	MT510649
					U003-o2	Oral swab	0.0003%	31.60%	66,527	13,995	310	68.48	131,129	218	0.51%	MT510650
					U003-o3	Oral swab	0.0000%	41.90%	65,984	21,979	47	21.31	131,143	24	-	MT510651
U004	37	M	277,655	85	U004-C	Tumor	0.0016%	17.20%	19,582	3,078	34	7.41	131,277	12	-	MT510663
					U004-D	Tumor	0.0017%	75.10%	60,340	10,253	1,291	280.27	131,237	73	0.73%	MT510665
					U004-o1	Oral swab	0.0001%	18.90%	37,794	6,280	56	11.70	131,277	31	-	MT510664
U007	26	M	91,096	136	U007-B	Tumor	0.0006%	86.90%	75,001	19,771	1,172	268.44	131,352	156	0.17%	MT510654
					U007-o1	Oral swab	0.0001%	27.60%	43,707	6,258	206	25.54	131,126	61	1.93%	MT510655
U008	56	M	860,937	488	U008-B	Tumor	0.0049%	16.97%	19,309	4,168	637	148.42	131,142	31	0.93%	MT510656
					U008-D	Tumor	0.0040%	29.98%	26,209	4,674	195	42.95	131,102	24	0.70%	MT510657
					U008-o1	Oral swab	0.0000%	23.50%	48,339	6,869	114	16.62	131,116	76	2.11%	MT510658
U020	27	M	118,191	370	U020-B	Tumor	0.0070%	1.47%	2,913	14,971	24	196.60	131,102	10	2.40%	MT510666
					U020-C	Tumor	0.0003%	34.38%	420	3,674	3	2.51	131,471	30	-	MT510667
					U020-o1	Oral swab	0.0000%	77.30%	73,287	22,429	80	21.66	131,115	22	-	MT510668
U023	33	F	338,285	191	U023-o1	Oral	0.0001%	2.70%	19,889	6,683	2	1.30	131,122	2	-	MT510669
U030	40	M	100,184	70	U030-C	Tumor	0.0135%	15.68%	38,935	6,664	490	62.59	131,282	17	1.08%	MT510670
U032	23	F	587,149	274	U032-B	Tumor	0.0003%	43.50%	69,815	9,269	890	67.12	131,266	45	0.41%	MT510652
					U032-o1	Oral	0.0000%	7.70%	7,311	3,218	1	0.80	130,842	-	-	MT510653
U034	47	F	130,375	237	U034-B	Tumor	0.0014%	84.40%	74,927	13,969	1,747	189.51	131,248	107	0.11%	MT510659
					U034-C	Tumor	0.0013%	30.70%	17,968	2,505	133	24.36	131,088	11	1.46%	MT510660
					U034-o1	Oral swab	0.0000%	7.30%	7,851	2,818	2	1.22	130,754	2	-	MT510661
					U034-o2	Oral swab	0.0000%	6.00%	4,085	1,735	1	0.62	130,884	-	-	MT510662