Table 2.
HTT LINEs Inserted into Exons, UTRs, or within 5,000 bp Upstream of 5ʹ UTRs of Genes within the A. laevis Assembly and Transcriptome
| Gene | LINE | Distance to 5’ UTR (bp) | Insertion size (bp) |
|---|---|---|---|
| Acetyl-CoA Acyltransferase 1 (ARIH1) | Proto2-Snek | 223 | 85 |
| KN Motif And Ankyrin Repeat Domains 4 (KANK4) | Proto2-Snek | 4,987 | 161 |
| Potassium Calcium-Activated Channel Subfamily N Member 4 (KCNN4) | Proto2-Snek | 3,746 | 98 |
| Outer Mitochondrial Membrane Lipid Metabolism Regulator OPA3 (OPA3) | Rex1-Snek_2 | 3,149 | 81 |
| Rabaptin, RAB GTPase Binding Effector Protein 1 (RABEP1) | Proto2-Snek | 1,389 | 99 |
| Valosin Containing Protein Lysine Methyltransferase (VCPKMT) | Rex1-Snek_1H1 | 512 | 76 |
| Cdc42 effector protein 4 (CDC42EP4) | RTE-Snek_2 | 1,475 | 422 |
| Gamma-aminobutyric acid receptor subunit alpha-3 (GABRA3) | RTE-Snek_2 | 4,247 | 95 |
| Leucine-zipper-like transcriptional regulator 1 (LZTR1) | RTE-Snek_2 | 2,066 | 421 |
| Polyadenylate-binding protein 2 (PABPN1) | RTE-Snek_2 | 145 | 431 |
| Parvalbumin alpha (PVALB) | RTE-Snek_2 | 4,152 | 52 |
| Deaminated glutathione amidase (NIT1) | RTE-Snek_2 | In coding exon | 228 |
| Adenylate cyclase type 4 (ADCY4) | RTE-Snek_2 | In 3ʹ UTR and transcript | 130 |
| CAP-Gly Domain Containing Linker Protein Family Member 4 (CLIP4) | RTE-Snek_1 | In transcript | — |
| BLOC-1 Related Complex Subunit 8 (BORCS8) | Rex1-Snek_1H3 | In transcript | — |