Online-only Table 1.
Information and source of genomic data used in Nelumbo Genome Database.
| Datatype | Platform | Cultivar Name | Utility | Tissue/developmental stage | Accession number (NCBI SRA) |
|---|---|---|---|---|---|
| DNA | PacBio SMRT | China Antique | Genome assembly | Young leaf | SRR7549129 |
| DNA | PacBio SMRT | China Antique | Genome assembly | Young leaf | SRR7549130 |
| DNA | Illumina & Hi-C | China Antique | Genome assembly | Young leaf | SRR7615553 |
| DNA | Illumina & Hi-C | China Antique | Genome assembly | Young leaf | SRR7631523 |
| RNA | PacBio SMRT | China Antique | Gene & isoform prediction | mixed tissue samples | SRR8182148 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP6 | SRR7880135 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP6 | SRR7880135 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP6 | SRR7880135 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP12 | SRR7880134 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP12 | SRR7880134 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP12 | SRR7880134 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP18 | SRR7880133 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP18 | SRR7880133 |
| RNA | Illumina | China Antique | Gene expression | Seed-coat-DAP18 | SRR7880133 |
| RNA | Illumina | China Antique | Gene expression | Petal | SRR8169126 |
| RNA | Illumina | China Antique | Gene expression | Petal | SRR8169126 |
| RNA | Illumina | China Antique | Gene expression | Immature-stamen | SRR8169123 |
| RNA | Illumina | China Antique | Gene expression | Immature-stamen | SRR8169123 |
| RNA | Illumina | China Antique | Gene expression | unpollinated-carpel | SRR8169124 |
| RNA | Illumina | China Antique | Gene expression | unpollinated-carpel | SRR8169124 |
| RNA | Illumina | China Antique | Gene expression | Immature-receptacle | SRR8169125 |
| RNA | Illumina | China Antique | Gene expression | Immature-receptacle | SRR8169125 |
| RNA | Illumina | China Antique | Gene expression | Mature-stamen | SRR8169127 |
| RNA | Illumina | China Antique | Gene expression | Mature-stamen | SRR8169127 |
| RNA | Illumina | China Antique | Gene expression | Pollinated-carpel | SRR8169128 |
| RNA | Illumina | China Antique | Gene expression | Pollinated-carpel | SRR8169128 |
| RNA | Illumina | China Antique | Gene expression | Mature-receptacle | SRR8169129 |
| RNA | Illumina | China Antique | Gene expression | Mature-receptacle | SRR8169129 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP9 | SRR6432938 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP9 | SRR6432938 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP9 | SRR6432938 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP12 | SRR6432941 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP12 | SRR6432941 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP12 | SRR6432941 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP15 | SRR6432942 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP15 | SRR6432942 |
| RNA | Illumina | China Antique | Gene expression | Cotyledon-DAP15 | SRR6432942 |
| RNA | Illumina | China Antique | Gene expression | lotus root | SRR826691 |
| RNA | Illumina | China Antique | Gene expression | Leaf | SRR830399 |
| RNA | Illumina | China Antique | Gene expression | Leaf | SRR831069 |
| RNA | Illumina | China Antique | Gene expression | Leaf | SRR831070 |
| RNA | Illumina | China Antique | Gene expression | Leaf | SRR831071 |
| RNA | Illumina | China Antique | Gene expression | Leaf | SRR831072 |
| RNA | Illumina | China Antique | Gene expression | rhizome Internode | SRR831082 |
| RNA | Illumina | China Antique | Gene expression | rhizome Internode | SRR831083 |
| RNA | Illumina | China Antique | Gene expression | rhizome Internode | SRR831084 |
| RNA | Illumina | China Antique | Gene expression | rhizome Internode | SRR831086 |
| RNA | Illumina | China Antique | Gene expression | rhizome Internode | SRR831087 |
| RNA | Illumina | China Antique | Gene expression | Petiole | SRR831088 |
| RNA | Illumina | China Antique | Gene expression | Petiole | SRR831089 |
| RNA | Illumina | China Antique | Gene expression | Petiole | SRR831090 |
| RNA | Illumina | China Antique | Gene expression | Petiole | SRR831167 |
| RNA | Illumina | China Antique | Gene expression | Petiole | SRR831168 |
| RNA | Illumina | China Antique | Gene expression | Root | SRR831169 |
| RNA | Illumina | China Antique | Gene expression | Root | SRR831170 |
| RNA | Illumina | China Antique | Gene expression | Root | SRR831171 |
| RNA | Illumina | China Antique | Gene expression | Root | SRR831172 |
| RNA | Illumina | China Antique | Gene expression | Root | SRR831173 |
| RNA | Illumina | China Antique | Gene expression | rhizome apical meristem | SRR831190 |
| RNA | Illumina | China Antique | Gene expression | rhizome elongation Zone | SRR831693 |
| RNA | Illumina | cultivated rhizome lotus (CRL) plants | Gene expression | Apical buds | SRR879365 |
| RNA | Illumina | wild flower lotus (WFL) plants | Gene expression | Apical buds | SRR879367 |
| RNA | Illumina | Zhouou | Gene expression | rhizome (stolon/internode) | SRR2052526 |
| RNA | Illumina | Zhouou | Gene expression | rhizome (stolon/internode) | SRR2052539 |
| RNA | Illumina | Zhouou | Gene expression | rhizome (later swelling stage/internode) | SRR2052541 |
| RNA | Illumina | Fenhonglingxiao | Gene expression | rhizome (stolon/internode) | SRR2052538 |
| RNA | Illumina | Fenhonglingxiao | Gene expression | rhizome (stolon/internode) | SRR2052542 |
| RNA | Illumina | Zhouou | Gene expression | rhizome (later swelling stage/internode) | SRR2052551 |
| RNA | Illumina | Zhouou | Gene expression | rhizome (middle swelling stage/internode) | SRR2052560 |
| RNA | Illumina | Fenhonglingxiao | Gene expression | rhizome (middle swelling stage/internode) | SRR2052568 |
| RNA | Illumina | Fenhonglingxiao | Gene expression | rhizome (middle swelling stage/internode) | SRR2052569 |
| RNA | Illumina | Fenhonglingxiao | Gene expression | rhizome (later swelling stage/internode) | SRR2052570 |
| RNA | Illumina | Zhouou | Gene expression | rhizome (later swelling stage/internode) | SRR2052571 |
| RNA | Illumina | Fenhonglingxiao | Gene expression | rhizome (later swelling stage/internode) | SRR2052573 |
| DNA | Illumina | shentong | Whole-genome resequencing | young leaf | SRR8325858 |
| DNA | Illumina | fozuolian | Whole-genome resequencing | young leaf | SRR8325857 |
| DNA | Illumina | yuloutai | Whole-genome resequencing | young leaf | SRR8325860 |
| DNA | Illumina | jiaoyangzuiwu | Whole-genome resequencing | young leaf | SRR8325859 |
| DNA | Illumina | xiaolianzuo | Whole-genome resequencing | young leaf | SRR8325862 |
| DNA | Illumina | huoyan | Whole-genome resequencing | young leaf | SRR8325868 |
| DNA | Illumina | yongshi | Whole-genome resequencing | young leaf | SRR8325864 |
| DNA | Illumina | chongbanbayilian | Whole-genome resequencing | young leaf | SRR8325863 |
| DNA | Illumina | ziyulian | Whole-genome resequencing | young leaf | SRR8325866 |
| DNA | Illumina | hongwanlian | Whole-genome resequencing | young leaf | SRR8325865 |
| DNA | Illumina | baixuegongzhu | Whole-genome resequencing | young leaf | SRR8325880 |
| DNA | Illumina | baiwanwan | Whole-genome resequencing | young leaf | SRR8325879 |
| DNA | Illumina | yudie | Whole-genome resequencing | young leaf | SRR8325878 |
| DNA | Illumina | fenwanlian | Whole-genome resequencing | young leaf | SRR8325877 |
| DNA | Illumina | taizhenchuyu | Whole-genome resequencing | young leaf | SRR8325884 |
| DNA | Illumina | manaohong | Whole-genome resequencing | young leaf | SRR8325883 |
| DNA | Illumina | luoxiayingxue | Whole-genome resequencing | young leaf | SRR8325882 |
| DNA | Illumina | mudanxianzi | Whole-genome resequencing | young leaf | SRR8325881 |
| DNA | Illumina | pinghuqiuyue | Whole-genome resequencing | young leaf | SRR8325872 |
| DNA | Illumina | tianshanbitai | Whole-genome resequencing | young leaf | SRR8325871 |
| DNA | Illumina | lihuabai | Whole-genome resequencing | young leaf | SRR8325836 |
| DNA | Illumina | hongjuan | Whole-genome resequencing | young leaf | SRR8325837 |
| DNA | Illumina | xinlingmei | Whole-genome resequencing | young leaf | SRR8325834 |
| DNA | Illumina | shuangjie | Whole-genome resequencing | young leaf | SRR8325835 |
| DNA | Illumina | fenghuazhengmao | Whole-genome resequencing | young leaf | SRR8325840 |
| DNA | Illumina | juhong | Whole-genome resequencing | young leaf | SRR8325841 |
| DNA | Illumina | cenglinjinran | Whole-genome resequencing | young leaf | SRR8325838 |
| DNA | Illumina | fenmudan | Whole-genome resequencing | young leaf | SRR8325839 |
| DNA | Illumina | chanjuan | Whole-genome resequencing | young leaf | SRR8325843 |
| DNA | Illumina | cuitai | Whole-genome resequencing | young leaf | SRR8325844 |
| DNA | Illumina | zixiabei | Whole-genome resequencing | young leaf | SRR8325870 |
| DNA | Illumina | bixuedanxin | Whole-genome resequencing | young leaf | SRR8325869 |
| DNA | Illumina | xiaofengliangyue | Whole-genome resequencing | young leaf | SRR8325853 |
| DNA | Illumina | xiaotaihong | Whole-genome resequencing | young leaf | SRR8325847 |
| DNA | Illumina | nanjinghong | Whole-genome resequencing | young leaf | SRR8325874 |
| DNA | Illumina | shuimeiren | Whole-genome resequencing | young leaf | SRR8325873 |
| DNA | Illumina | yubanbai | Whole-genome resequencing | young leaf | SRR8325876 |
| DNA | Illumina | yuhua | Whole-genome resequencing | young leaf | SRR8325875 |
| DNA | Illumina | liuhuo | Whole-genome resequencing | young leaf | SRR8325867 |
| DNA | Illumina | xiaoxia | Whole-genome resequencing | young leaf | SRR8325861 |
| DNA | Illumina | baiyun | Whole-genome resequencing | young leaf | SRR8325895 |
| DNA | Illumina | baiqianye | Whole-genome resequencing | young leaf | SRR8325848 |
| DNA | Illumina | jinzhuluoyupan | Whole-genome resequencing | young leaf | SRR8325849 |
| DNA | Illumina | hanhong | Whole-genome resequencing | young leaf | SRR8325850 |
| DNA | Illumina | fengximudan | Whole-genome resequencing | young leaf | SRR8325851 |
| DNA | Illumina | suzhibingzi | Whole-genome resequencing | young leaf | SRR8325852 |
| DNA | Illumina | chongbanyizhangqing | Whole-genome resequencing | young leaf | SRR8325842 |
| DNA | Illumina | zhongshanhongtai | Whole-genome resequencing | young leaf | SRR8325854 |
| DNA | Illumina | shennvzi | Whole-genome resequencing | young leaf | SRR8325855 |
| DNA | Illumina | yanzhilu | Whole-genome resequencing | young leaf | SRR8325856 |
| DNA | Illumina | xinjie | Whole-genome resequencing | young leaf | SRR8325892 |
| DNA | Illumina | chaitoufeng | Whole-genome resequencing | young leaf | SRR8325891 |
| DNA | Illumina | caiyunfeidu | Whole-genome resequencing | young leaf | SRR8325890 |
| DNA | Illumina | lianxia | Whole-genome resequencing | young leaf | SRR8325889 |
| DNA | Illumina | pizhenhong | Whole-genome resequencing | young leaf | SRR8325888 |
| DNA | Illumina | haoyue | Whole-genome resequencing | young leaf | SRR8325887 |
| DNA | Illumina | jiaoniang | Whole-genome resequencing | young leaf | SRR8325886 |
| DNA | Illumina | danxiuqiu | Whole-genome resequencing | young leaf | SRR8325885 |
| DNA | Illumina | hongdenggaozhao | Whole-genome resequencing | young leaf | SRR8325894 |
| DNA | Illumina | fenxia | Whole-genome resequencing | young leaf | SRR8325893 |
| DNA | Illumina | zhaoyun | Whole-genome resequencing | young leaf | SRR8325845 |
| DNA | Illumina | baimeilian | Whole-genome resequencing | young leaf | SRR8325846 |
| DNA | Illumina | hongtailian | Whole-genome resequencing | young leaf | SRR7159815 |
| DNA | Illumina | shuguangxiu | Whole-genome resequencing | young leaf | SRR7159817 |
| DNA | Illumina | donghuxinhong | Whole-genome resequencing | young leaf | SRR7159818 |
| DNA | Illumina | xiangbihe | Whole-genome resequencing | young leaf | SRR7159820 |
| DNA | Illumina | fengjuanhongqi | Whole-genome resequencing | young leaf | SRR7159821 |
| DNA | Illumina | xingkongmudan | Whole-genome resequencing | young leaf | SRR7159822 |
| DNA | Illumina | honghehuan | Whole-genome resequencing | young leaf | SRR7159825 |
| DNA | Illumina | jinlinghuodu | Whole-genome resequencing | young leaf | SRR7159826 |
| DNA | Illumina | xiaoqu | Whole-genome resequencing | young leaf | SRR7159827 |
| DNA | Illumina | xiaojingling | Whole-genome resequencing | young leaf | SRR7159828 |
| DNA | Illumina | zuidongfeng | Whole-genome resequencing | young leaf | SRR7159829 |
| DNA | Illumina | hongyun | Whole-genome resequencing | young leaf | SRR7159830 |
| DNA | Illumina | jinlingzhixing | Whole-genome resequencing | young leaf | SRR7159831 |
| DNA | Illumina | danyue | Whole-genome resequencing | young leaf | SRR7159832 |
| DNA | Illumina | qinhuaibaiyu | Whole-genome resequencing | young leaf | SRR7159833 |
| DNA | Illumina | baige | Whole-genome resequencing | young leaf | SRR4308656 |
| DNA | Illumina | baiyangdianhonglian | Whole-genome resequencing | young leaf | SRR4308659 |
| DNA | Illumina | donghonghua | Whole-genome resequencing | young leaf | SRR4308651 |
| DNA | Illumina | fenhonglingxiao | Whole-genome resequencing | young leaf | SRR4308650 |
| DNA | Illumina | heilongjianghonglian | Whole-genome resequencing | young leaf | SRR4308657 |
| DNA | Illumina | jianxuan17 | Whole-genome resequencing | young leaf | SRR4308643 |
| DNA | Illumina | puzheheibailian | Whole-genome resequencing | young leaf | SRR4308658 |
| DNA | Illumina | qianbanlian | Whole-genome resequencing | young leaf | SRR4308655 |
| DNA | Illumina | weishanhonglian | Whole-genome resequencing | young leaf | SRR4308645 |
| DNA | Illumina | xihuhonglian | Whole-genome resequencing | young leaf | SRR4308660 |
| DNA | Illumina | zhigaowushang | Whole-genome resequencing | young leaf | SRR4308649 |