Table 1.
Potential targets of StmiR858 in potato
| Target gene ID | Target start | Target end | Target annotation | Target aligned fragment | Inhibition |
|---|---|---|---|---|---|
| PGSC0003DMT400023322 | 335 | 355 | MYB 12 transcription factor (MYB12C) | UCAGGUAGAACAGACAAUGAG | Cleavage |
| PGSC0003DMT400014983 | 289 | 309 | MYBPA1 protein | CCAGGUCGAACAGAUAAUGAA | Cleavage |
| PGSC0003DMT400005061 | 2214 | 2234 | Glycosyl transferase family 1 protein | UGAGUUUGAACAGAUAAUGAG | Cleavage |
| PGSC0003DMT400018841 | 302 | 322 | MYB 12 transcription factor (MYB12A) | CCAGGUAGAACAGACAAUGAA | Cleavage |
| PGSC0003DMT400030322 | 109 | 129 | Hypothetical gene of unknown function | CCAGGACGAACAGACAAUGAA | Cleavage |
| PGSC0003DMT400018840 | 268 | 288 | MYB 12 transcription factor | CCAGGUAGAACAGACAAUGAA | Cleavage |
| PGSC0003DMT400036086 | 530 | 550 | Protein 3 | CCCGGUAGAACAGACAAUGAG | Cleavage |
| PGSC0003DMT400016394 | 289 | 309 | Transcription factor MYB102 | UCAGGAAGAACAGACAAUGAG | Cleavage |
| PGSC0003DMT400035505 | 1726 | 1746 | JmjC domain containing protein | GCAGGUUGAACAAAUAAUGAG | Cleavage |
Target genes were predicted using psRNATarget. Gene annotations were obtained from Potato Genome Database (http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml). Of these potential target genes, PGSC0003DMT400023322 and PGSC0003DMT400018841 are MYB12C and MYB12A, respectively