Table 4.
circRNA databases.
| Database | Website | Function | Ref |
|---|---|---|---|
| circBase | http://www.circbase.org/ | circRNA database | (161) |
| circAtlas 2.0 | http://circatlas.biols.ac.cn/ | comprehensive database of circRNAs across species | (166) |
| TSCD | http://gb.whu.edu.cn/TSCD/ | tissue-specific circRNA database | (159) |
| CSCD | http://gb.whu.edu.cn/CSCD/ | cancer-specific circRNA database | (160) |
| deepBase v2.0 | http://biocenter.sysu.edu.cn/deepBase/ | circRNA database | (167) |
| circRNADisease | http://cgga.org.cn:9091/circRNADisease/ | circRNA and disease associations database | (168) |
| CircBank | http://www.circbank.cn/index.html | annotation and function prediction. | (169) |
| CircInteractome | https://circinteractome.nia.nih.gov/ | primer design and function prediction | (163) |
| circRNADb | http://reprod.njmu.edu.cn/cgi-bin/circrnadb/circRNADb.php | annotation and function prediction | (162) |
| Circ2Traits | http://gyanxet-beta.com/circdb/ | annotation and function prediction | (170) |
| circNet | http://syslab5.nchu.edu.tw/CircNet/ | circRNA-miRNA prediction | (171) |
| RegRNA2.0 | http://regrna2.mbc.nctu.edu.tw/index.html | platform for functional RNA motif prediction | (172) |
| RNAstructure | http://rna.urmc.rochester.edu/RNAstructureWeb/ | secondary structure and RNA-RNA binding prediction | (173) |
| starBase v2.0 | http://starbase.sysu.edu.cn/ | circRNA-RNA and circRNA-RBP interaction | (174) |
| catRAPID | http://s.tartaglialab.com/page/catrapid_group | circRNA-protein interaction prediction | (175) |
| RPISeq | http://pridb.gdcb.iastate.edu/RPISeq/ | circRNA-protein interaction prediction | (176) |
| IRESite | http://www.iresite.org | database of experimentally verified IRES structures | (177) |
| IRESfinder | https://github.com/xiaofengsong/IRESfinder | IRES prediction | (178) |
| IRESPred | http://bioinfo.net.in/IRESPred/ | IRES prediction | (164) |
| SORFS | http://www.sorfs.org/ | ORF database | (179) |
| ORFfinder | https://www.ncbi.nlm.nih.gov/orffinder/ | ORF prediction | – |
| PhyloCSF | http://compbio.mit.edu/PhyloCSF | ORF prediction | (180) |
| OrfPredictor | http://bioinformatics.ysu.edu/tools/OrfPredictor.html | ORF prediction | (165) |
| SMS : ORF Finder | http://www.bioinformatics.org/sms2/orf_find.html | ORF prediction | (181) |
| CPC | http://cpc.cbi.pku.edu.cn | coding-potential assessment | (182) |
| CPAT | http://lilab.research.bcm.edu/cpat/index.php | coding-potential assessment | (183) |
| CircPro | http://bis.zju.edu.cn/CircPro | coding-potential assessment | (184) |
| CircCode | https://github.com/PSSUN/CircCode | coding-potential assessment | (185) |