Table 2.
Alpha block haplotypes and alleles from AluHF to AluHJ including HLA-F, -G, -H, -A, and -J alleles.
| Hap ID | No. Hap | AluHF | HLA-F | HLA-G | AluHG | ERVK9 | HLA-H | HLA-A | HLA-J | AluHJ |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5 | 1 | 01:01:01:09 | 01:01:02 | 1 | 1 | 02:01 | 01:01:01 | 01:01:01:02 | 2 |
| 2 | 9 | 1 | 01:01:01:09 | 01:06 | 1 | 1 | 02:01 | 01:01:01 | 01:01:01:02 | 2 |
| 3 | 13 | 1 | 01:01:01:01 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 4 | 1 | 1 | 01:01:01:01 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:04 | 1 |
| 5 | 1 | 1 | 01:01:01:01 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 6 | 1 | 1 | 01:01:01:04 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 7 | 3 | 1/2 | 01:01:01:08 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 8 | 2 | 1/2 | 01:01:01:08 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:02 | 1 |
| 9 | 1 | 1 | 01:01:01:09 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 10 | 1 | 1 | 01:04:01:02 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 11 | 1 | 1 | 01:01:02:07 | 01:03:01 | 1 | 1 | New | 02:05:01 | New | 1 |
| 12 | 1 | 1 | 01:01:01:09 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 13 | 1 | 1 | 01:04:01:02 | 01:01:01 | 2 | 1 | 01:01 | 02:01:01 | 01:01:01:05 | 1 |
| 14 | 1 | 1 | 01:01:02:07 | 01:03:01 | 1 | 1 | New | 02:05:01 | New | 1 |
| 15 | 1 | 1 | 01:01:01:18/19 | 01:01:22 | 1 | 1 | 02:04 | 03:01:01 | 01:01:01:02 | 2 |
| 16 | 6 | 1 | 01:03:01:01/04 | 01:01:01 | 1 | 2 | 02:04 | 03:01:01 | 01:01:01:04 | 1 |
| 17 | 2 | 1 | 01:01:02:09/12 | 01:01:03 | 1 | 2 | New | 11:01:01 | 01:01:01:04 | 1 |
| 18 | 1 | 1 | 01:03:01:03 | 01:04:04 | 1 | 2 | Deletion | 23:01:01 | 01:01:01:04 | 1 |
| 19 | 1 | 1 | 01:01:01:08 | 01:04:01 | 1 | 2 | Deletion | 24:02:01 | 01:01:01:02 | 2 |
| 20 | 3 | 1 | 01:01:01:09 | 01:04:01 | 1 | 2 | Deletion | 24:02:01 | 01:01:01:02 | 2 |
| 21 | 1 | 1 | 01:01:01:09 | 01:04:01 | 1 | 2 | Deletion | 24:02:01 | 01:01:01:04 | 1 |
| 22 | 1 | 1 | 01:01:02:10 | 01:04:01 | 1 | 2 | Deletion | 24:02:01 | 01:01:01:02 | 2 |
| 23 | 3 | 1 | 01:01:01:18/19 | 01:01:02 | 1 | 2 | Deletion | 24:02:01 | 01:01:01:02 | 2 |
| 24 | 3 | 1/2 | 01:01:01:08 | 01:01:02 | 1 | 1 | 01:02 | 26:01:01 | 01:01:01:08 | 1 |
| 25 | 4 | 2 | 01:01:01:08 | 01:01:01 | 1 | 1 | 02:02 | 29:02:01 | 01:01:01:01 | 1 |
| 26 | 1 | 1 | 01:01:01:09 | 01:01:02 | 1 | 1 | New | 30:01/A68 | New | 1 |
| 30 | 1 | 1 | 01:01:01:09 | 01:05N | 1 | 1 | New | 30:01:01 | New | 1 |
| 31 | 2 | 1 | 01:01:01:01/17 | 01:01:01 | 2 | 1 | New | 30:02:01 | 01:01:01:04 | 1 |
| 32 | 1 | 1 | 01:01:01 | 01:03:01 | 2 | 1 | 01:01 | 31:01:02 | 01:01:01:05 | 1 |
| 33 | 3 | 1 | 01:01:01:11 | 01:03:01 | 1 | 2 | New | 31:01:02 | New | 1 |
| 34 | 2 | 1 | 01:01:02:06/10 | 01:01:22 | 1 | 1 | 02:03 | 32:01:01 | 01:01:01:06 | 2 |
| 35 | 1 | 1 | 01:01:02:06 | 01:01:12 | 1 | 1 | 02:03 | 32:01:01 | 01:01:01:06 | 2 |
| 36 | 2 | 1 | 01:01:02:07 | 01:03:01 | 1 | 2 | New | 33:01:01 | New | 1 |
| 37 | 1 | 1 | 01:01:02:10 | 01:04:01 | 1 | 2 | New | 33:01:01 | New | 1 |
| 38 | 1 | 1 | 01:01:01:08 | 01:01:02 | 1 | 1 | 01:02 | 66:01:01 | New | 1 |
| 39 | 1 | 2 | 01:01:01:18/19 | 01:01:02 | 1 | 1 | New | 68:02:01 | New | 1 |
For AluHF, AluHG, AluHJ, and ERVK9, allele 1 is the absence of the element and allele 2 is the presence of the element. This nine-marker table is a summary of the more detailed Supplementary Table 4 with 21 markers.