Table 3.
Beta block haplotypes.
| Hap ID | No. Haps | SVA-HC | HLA-C | SVA-BC | 9.5 kb indel | SVA-HB | HLA-B | SVA-MIC | MICA | MICB | CEH/AH |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 01:02:01 | 2 | 2 | 1 | 46:01:01 | 2 | 010:01 | 005:02 | 46 | |
| 2 | 1 | 1 | 01:02:01 | 2 | 2 | 1 | 51:01:01 | 2 | 010:01 | 005:02 | 51 |
| 3 | 1 | 1 | 01:02:01 | 2 | 2 | 1 | 54:01:01 | 1 | 012:01 | 005:02 | 54 |
| 4 | 1 | 1 | 01:02:01 | 2 | 2 | 1 | 56:01:01 | 1 | 012:01 | 005:02 | 56 |
| 5 | 1 | 1 | 01:02:01 | 2 | 2 | 1 | 15:01:01:01 | 2 | 010:01 | 006 | 15 |
| 6 | 1 | 1 | 03:04:01:01 | 1 | 2 | 1 | 40:01:02 | 2 | 008:04 | 002:01 | 40 |
| 7 | 5 | 1 | 05:01:01:01 | 1 | 2 | 1 | 18:01:01:01 | 1/2 | 001 | 005:02 | 18.2 |
| 8 | 5 | 1 | 05:01:01:02 | 1 | 2 | 1 | 44:02:01:01 | 1 | 008:01 | 005:02 | 44.1 |
| 9 | 2 | 1 | 07:01:01:01 | 1/2 | 2 | 1 | 18:01:01:02 | 1/2 | 018:01 | 002:01 | 18. |
| 10 | 1 | 1 | 07:01:01:01 | 2 | 2 | 1 | 49:01:01 | 1 | 004 | 005:02 | 49.x |
| 11 | 1 | 1 | 07:01:01:01 | 2 | 2 | 1 | 57:01:01 | 2 | 017 | 003 | 57.1 |
| 12 | 8 | 2 | 07:02:01:03 | 1 | 2 | 1 | 07:02:01 | 2 | 008:04 | 004:01 | 7.1 |
| 13 | 1 | 1 | 08:02:01:01 | 1 | 2 | 1 | 14:01:01 | 2 | 019:01 | 005:02 | 14.x |
| 14 | 2 | 1 | 08:02:01:01 | 1 | 2 | 1 | 14:02:01 | 1 | 011 | 005:02 | 14.y |
| 15 | 1 | 1 | 12:02:02 | 1 | 2 | 0 | 52:01:01 | 2 | 009:01 | 002:01 | 52.1 |
| 16 | 1 | 1 | 14:02:01 | 2 | 2 | 1 | 51:01:01 | 2 | 049 | 005:02 | 51 |
| 17 | 1 | 1 | 14:03 | 2 | 2 | 1 | 44:03:01 | 2 | 004 | 005:02 | 44 |
| 18 | 1 | 1 | 15:02:01 | 1 | 2 | 1 | 51:01:01 | 2 | 009:01 | 002:01 | 51.y |
| 19 | 2 | 1 | 15:02:01 | 1 | 2 | 1 | 51:01:01 | 2 | 009:01 | 005:02 | 51.x |
| 20 | 2 | 1 | 01:02:01 | 1 | 2 | 2* | 27:05:02 | 1 | 007:01 | 005:02 | 27.1 |
| 21 | 1 | 1 | 02:02:02:01 | 1 | 2 | 2 | 27:05:02 | 1 | 007:01 | 005:02 | 27.x |
| 22 | 2 | 1 | 02:02:02:01 | 1 | 2 | 2 | 40:02:01 | 2 | 027 | 005:02 | 40.x |
| 23 | 1 | 1 | 02:02:02:01 | 1 | 2 | 2 | 40:02:01 | 2 | 027 | 013 | 40.y |
| 24 | 2 | 1 | 03:03:01 | 1 | 2 | 2 | 15:01:01:01 | 1/2 | 010:01 | 002:01 | 15.x |
| 25 | 1 | 1 | 03:03:01 | 1 | 2 | 2 | 15:01:01:01 | 2 | 010:01 | 005:02 | 15.y |
| 26 | 3 | 1 | 03:04:01:01 | 1 | 2 | 2* | 15:01:01:01 | 2 | 010:01 | 002:01 | 62.1 |
| 27 | 1 | 1 | 03:04:01:01 | 1 | 2 | 2 | 40:01:02 | 2 | 008:04 | 002:01 | 60.x |
| 28 | 1 | 1 | 03:04:01:01 | 1 | 2 | 2 | 40:01:02 | 2 | 008:04 | 004:01 | 60.y |
| 29 | 1 | 1 | 03:04:01:01 | 1 | 2 | 2 | 40:01:02 | 2 | 008:04 | 014 | 60.z |
| 30 | 1 | 1 | C*04:01:01:01 | 1 | 2 | 2* | 15:26N | 2 | 010:01 | 005:02 | 15.n |
| 31 | 1 | 1 | C*04:01:01:01 | 1 | 2 | 2 | 35:01:01:01 | 0 | 002:01 | 005:02 | 35.x |
| 32 | 1 | 1 | C*04:01:01:01 | 1 | 0 | 2 | 35:01:01:01 | 2 | 017 | 003 | 35.y |
| 33 | 1 | 1 | C*04:01:01:01 | 0 | 2 | 2* | 35:01:01:02 | 1 | 002:01 | 002:01 | 35.2 |
| 34 | 2 | 1 | C*04:01:01:01 | 1 | 2 | 2 | 35:02:01 | 2 | 016 | 005:01 | 35.z |
| 35 | 1 | 1 | C*04:01:01:01 | 1 | 2 | 2 | 35:03:01 | 1 | 002:01 | 005:02 | 35.w |
| 36 | 1 | 1 | C*04:01:01:01 | 1 | 2 | 2* | 35:08:01 | 2 | 016 | 002:01 | 35.v |
| 37 | 1 | 1 | C*04:01:01:01 | 1 | 2 | 2* | 53:01:01 | 1 | 002:01 | 006 | 53.x |
| 38 | 3 | 1 | 06:02:01:01 | 1 | 0 | 2 | 13:02:01 | 2 | 008:01 | 005:02 | 13.1 |
| 39 | 1 | 1 | 06:02:01:01 | 1 | 0 | 2* | 37:01:01 | 2 | 010:01 | 002:01 | 37.x |
| 40 | 1 | 1 | 06:02:01:01 | 1 | 0 | 2 | 40:01:02 | 2 | 008:04 | 004:01 | 40.x |
| 41 | 1 | 1 | 06:02:01:01 | 1 | 0 | 2 | 47:01:01: | 2 | 008:01 | 004:01 | 47.1 |
| 42 | 4 | 1 | 06:02:01:01 | 1 | 0 | 2 | 57:01:01 | 2 | 017 | 003 | 57.1 |
| 43 | 1 | 1 | 06:02:01:02 | 1 | 0 | 2 | 50:01:01 | 1 | 009:02 | 005:06 | 50.1 |
| 44 | 5 | 1 | 07:01:01:01 | 1 | 2 | 2/2* | 08:01:01 | 1 | 008:01 | 008 | 8.1 |
| 45 | 1 | 1 | 07:01:01:01 | 1 | 2 | 2 | 08:01:01 | 2 | 008:04 | 004:01 | 8.x |
| 46 | 1 | 1 | 07:18 | 1 | 2 | 2* | 58:01:01 | 1 | 002:01 | 008 | 58.1 |
| 47 | 3 | 1 | 12:02:02 | 1 | 2 | 2/2* | 52:01:01 | 2 | 009:01 | 005:03 | 52.1 |
| 48 | 1 | 1 | 12:03:01:01 | 1 | 0 | 2 | 35:03:01 | 1 | 002:01 | 005:02 | 35.2 |
| 49 | 3 | 1 | 12:03:01:01 | 1 | 0 | 2/2* | 38:01:01 | 1 | 002:01 | 002:01 | 38.x |
| 50 | 1 | 1 | 12:03:01:01 | 1 | 0 | 2* | 51:01:01 | 2 | 006 | 005:02 | 51.x |
| 51 | 3 | 1 | 16:01:01 | 1 | 2 | 2 | 44:03:01 | 1 | 004 | 005:02 | 44.2 |
| 52 | 1 | 1 | 16:01:01 | 1 | 2 | 2 | 45:01:01 | 2 | 015 | 002:01 | 45.x |
| 53 | 1 | 1 | 17:01:01:02 | 1 | 2 | 2 | 41:01:01 | 1 | 004 | 005:02 | 41.x |
| 54 | 1 | 1 | 17:01:01:02 | 1 | 2 | 2 | 42:01:01 | 1 | 004 | 002:01 | 42.1 |
SVA-HB allele 2* is a SVA-HB duplicated sequence within LTR10/HERVI/LTR10 rearrangements that do not correlate with any particular HLA-C lineage and therefore may be sequence assembly errors. For SVA, Alu, and the indel, allele 1 is the absence of the element and allele 2 is the presence of the element.