Table 4.
SNP-poor (SP) and SNP-rich (SR) haplotypes in the MHC class I region from GPX5 to MICB.
| Lab ID | CEH | Haplotype | SP region | SNPs/100 kb | Sequence length kb |
|---|---|---|---|---|---|
| 4 | 7.1 | A*03:01/C*07:02/B*07:02 | 2,939 | ||
| 6 | 7.1 | A*03:01/C*07:02/B*07:02 | SP across whole region | 0.816 | 1,962 |
| 51 | 7.1 | A*03:01/C*07:02/B*07:02 | SP across whole region | 0.749 | 2,938 |
| 75 | 7.1 | A*03:01/C*07:02/B*07:02 | SP across whole region | 1.124 | 2,937 |
| 90 | 7.1 | A*03:01/C*07:02/B*07:02 | SP across whole region | 1.054 | 2,942 |
| 27 | 8.1 | A*01:01/C*07:01/B*08:01 | 2,996 | ||
| 11 | 8.1 | A*01:01/C*07:01/ B*08:01 | SP across whole region | 0.716 | 2,933 |
| 12 | 8.1 | A*01:01/C*07:01/B*08:01 | SP across whole region | 0.86 | 3,023 |
| 16 | 8.1 | A*01:01/C*07:01/B*08:01 | SP across whole region | 1.662 | 2,948 |
| 19 | 8.1 | A*01:01/C*07:01/B*08:01 | SP across whole region | 1.181 | 2,963 |
| 25 | 18.2 | A*30:02/C*05:01/B*18:01 | 2,988 | ||
| 26 | 18.2 | A*30:02/C*05:01/B*18:01 | SP across whole region | 0.68 | 2,940 |
| 67 | 51.x | A*02:04/C*15:02/B*51:01 | 2,952 | ||
| 76 | 51.x | A*02:04/C*15:02/B*51:01 | SP across whole region | 0.443 | 2,937 |
| 37 | 57.1 | A*02:01/C*06:02/B*57:01 | 2,984 | ||
| 58 | 57.1 | A*02:01/C*06:02/B*57:01 | SP across whole region | 0.546 | 2,932 |
| 17 | 62.x | A*02:01/C*03:03/B*15:01 | 2,944 | ||
| 32 | 62.x | A*02:01/C*03:03/B*15:01 | SP across whole region | 0.24 | 2,921 |
| 40 | 62.1 | A*02:01/C*03:04/B*15:01 | 2,941 | ||
| 85 | 62.1 | A*02:01/C*03:04/B*15:01 | SP across whole region | 0.769 | 2,990 |
| 41 | 62.1 | A*02:01/C*03:04/B*15:01 | SR/SP at LINC00243 | SR & SP | 2,922 |
| 49 | 65.1 | A*33:01/C*08:02/B*14:02 | 2,940 | ||
| 87 | 65.1 | A*33:01/C*08:02/B*14:02 | SP from MASIF to MICA | 9.1 | 1,923 |
| 78 | 44.2 | A*29:02/C*16:01/B*44:03 | 2,920 | ||
| 79 | 44.2 | A*29:02/C*16:01/B*44:03 | SP from MASIF to MICB | 0.847 | 1,772 |
| 83 | 44.2 | A*29:02/C*16:01/B*44:03 | SP from HLA-F to MICB | SR & SP | 2,975 |
| 23 | 35.5 | A*01:01/C*04:01/B*35:02 | 2,938 | ||
| 45 | 35.5 | A*01:01/C*04:01/B*35:02 | SP from HLA-F to MICB | SR & SP | 2,938 |
| 39 | 27.1 | A*02:01/C*01:02/B*27:05:02 | 2,943 | ||
| 47 | 27.1 | A*02:01/C*01:02/B*27:05:02 | SP from MUC21 to MICB | SR & SP | 2,944 |
| 24 | 44.1 | A*02:01/C*05:01/B*44:02 | 2,921 | ||
| 60 | 44.1 | A*02:01/C*05:01/B*44:02 | SP from HLA-C to MICB | SR & SP | 1,792 |
| 74 | 44.1 | A*02:01/C*05:01/B*44:02 | SP from HLA-F to MICB | SR & SP | 2,937 |
| 30 | 18.x | A*02:01/C*07:01/B*18:01 | 1,912 | ||
| 33 | 18.x | A*02:01/C*07:01/B*18:01 | SP from HLA-E to MICB | SR & SP | 2,929 |
| 62 | 52.1 | A*24:02/C*12:02/B*52:01 | 2,893 | ||
| 93 | 52.1 | A*24:02/C*12:02/B*52:01 | SP from HLA-L to MICB | SR & SP | 2,887 |
| 13 | 60.1 | A*02:01/C*03:04/B*40:01:02 | 2,749 | ||
| 86 | 60.1 | A*02:01/C*03:04/B*40:01:02 | 4 SNP crossover regions | SR & SP | 2,947 |
| 9 | 44.x | A*32:01/C*05:01/B*44:02 | 2,937 | ||
| 72 | 44.x | A*32:01/C*05:01/B*44:02 | 4 SNP crossover regions | SR & SP | 2,976 |
For details of sequence alignments between Lab ID and CEH, see Supplementary Table 8.