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. 2021 Jan 15;87(3):e01403-20. doi: 10.1128/AEM.01403-20

TABLE 1.

Metadata of the 132 V. parahaemolyticus shotgun sequences

CFSAN ID Strain ID Source State or provincea Date of isolation (day-mo-yr)b Serotype Sequence type SRA accession no. GenBank assembly ID GenBank accession no. BioSample accession no. Coverage depth (%) Total length (bp) No. of contigs No. of genes
CFSAN011163 CDC_K4556-2 Clinical LA 23-Oct-06 O1:Kuk ST744 SRR1118644 GCA_001727365.1 MISQ00000000 SAMN02368278 74 5,149,094 135 4,735
CFSAN011164 CDC_K4557 Clinical LA 19-Sep-06 O1:K33 ST799 SRR1840765 GCA_001727725.1 MISR00000000 SAMN02368279 35 5,074,019 94 4,619
CFSAN011165 CDC_K4558-1 Clinical LA 28-Aug-06 O3:K39 ST1143 SRR1118643 GCA_001727735.1 MISS00000000 SAMN02368280 34 5,032,007 120 4,611
CFSAN011166 CDC_K4558-2 Clinical LA 28-Aug-06 O3:Kuk ST636 SRR1118642 GCA_001727745.1 MIST00000000 SAMN02368281 88 5,335,587 155 4,897
CFSAN011167 CDC_K4588 Clinical ME 26-Jul-06 O5:Kuk ST746 SRR1118641 GCA_001727775.1 MISU00000000 SAMN02368282 57 5,014,336 118 4,610
CFSAN011168 CDC_K4636 Clinical NY 25-Sep-06 O10:Kuk ST636 SRR1815538 GCA_001727805.1 MISV00000000 SAMN03358827 35 5,340,949 138 4,889
CFSAN011169 CDC_K4637-1 Clinical NY 1-Oct-06 O3:K6 ST3 SRR1815539 GCA_001727815.1 MISW00000000 SAMN03358828 59 5,163,379 150 4,755
CFSAN011170 CDC_K4637-2 Clinical NY 1-Oct-06 O3:K6 ST3 SRR1815540 GCA_001727825.1 MISX00000000 SAMN03358829 59 5,156,414 133 4,740
CFSAN011171 CDC_K4638 Clinical NY 25-Sep-06 O10:Kuk ST809 SRR1118640 GCA_001727845.1 MISY00000000 SAMN02368283 47 5,077,332 96 4,619
CFSAN011172 CDC_K4639-1 Clinical NY 16-Oct-06 O4:K12 ST36 SRR1815541 GCA_001727895.1 MISZ00000000 SAMN03358830 61 5,092,291 122 4,654
CFSAN011173 CDC_K4639-2 Clinical NY 16-Oct-06 O4:Kuk ST36 SRR1118639 GCA_001727885.1 MITA00000000 SAMN02368284 57 5,078,734 114 4,658
CFSAN011175 CDC_K4762 Clinical VA 15-Aug-06 O5:K17 ST674 SRR1118637 GCA_001727925.1 MITB00000000 SAMN02368286 78 5,103,196 108 4,676
CFSAN011176 CDC_K4763 Clinical VA 25-Aug-06 O5:Kuk Untyped SRR1840764 GCA_001727915.1 MITC00000000 SAMN02368287 43 5,287,071 129 4,843
CFSAN011177 CDC_K4764-1 Clinical VA 13-Oct-06 O8:K41 Untyped SRR1815542 GCA_001727965.1 MITE00000000 SAMN03358831 43 5,276,586 114 4,813
CFSAN011178 CDC_K4764-2 Clinical VA 13-Oct-06 O8:K41 ST1156 SRR1118636 GCA_001727975.1 MITD00000000 SAMN02368288 52 5,033,430 111 4,616
CFSAN011179 CDC_K4775 Clinical GA 24-Feb-07 O3:K6 ST3 SRR1118635 GCA_001728005.1 MITF00000000 SAMN02368289 71 5,158,365 121 4,699
CFSAN011180 CDC_K4842 Clinical MD 16-Oct-06 O5:K47 ST1144 SRR1118634 GCA_001727995.1 MITG00000000 SAMN02368290 47 5,194,684 115 4,791
CFSAN011181 CDC_K4857-1 Clinical HI 28-Jan-07 O5:K17 ST79 SRR1118633 GCA_001728045.1 MITH00000000 SAMN02368291 37 5,038,683 103 4,569
CFSAN011182 CDC_K4857-2 Clinical HI 28-Jan-07 O5:Kuk ST79 SRR1118632 GCA_001728065.1 MITI00000000 SAMN02368292 47 5,039,775 108 4,592
CFSAN011183 CDC_K4858 Clinical HI 15-Sep-06 O4:K4 ST283 SRR1840763 GCA_001728085.1 MITJ00000000 SAMN02368293 56 4,961,237 89 4,534
CFSAN011184 CDC_K4859 Clinical HI 15-Feb-07 O6:K18 Untyped SRR1118631 GCA_001728095.1 MITK00000000 SAMN02368294 192 5,180,859 107 4,732
CFSAN011185 CDC_K4981 Clinical OK 12-Mar-07 O1:Kuk ST748 SRR1118630 GCA_001728125.1 MITL00000000 SAMN02368295 118 4,928,549 135 4,500
CFSAN011187 CDC_K5009-2 Clinical MA 7-Aug-06 O4:K53 ST749 SRR1118629 GCA_001728135.1 MITM00000000 SAMN02368297 94 5,125,537 130 4,681
CFSAN011188 CDC_K5010-1 Clinical MA 16-Sep-06 O1:Kuk ST3 SRR1118628 GCA_001728155.1 MITN00000000 SAMN02368298 59 5,122,961 146 4,694
CFSAN011189 CDC_K5010-2 Clinical MA 16-Sep-06 O1:Kuk ST3 SRR1118627 GCA_001728175.1 MITO00000000 SAMN02368299 94 5,118,895 134 4,676
CFSAN011190 CDC_K5058 Clinical TX 15-May-07 O3:K6 ST3 SRR1057385 GCA_001728205.1 MITP00000000 SAMN02368300 60 5,114,568 84 4,620
CFSAN011191 CDC_K5059-1 Clinical TX 10-May-07 O5:Kuk ST1147 SRR1840761 GCA_001728215.1 MITQ00000000 SAMN02368301 83 4,959,751 80 4,543
CFSAN011192 CDC_K5059-2 Clinical TX 10-May-07 O5:Kuk ST1147 SRR1057386 GCA_001728235.1 MITR00000000 SAMN02368302 458 4,953,954 123 4,513
CFSAN011193 CDC_K5067 Clinical SD 28-Apr-07 O1:K56 ST775 SRR1118626 GCA_001728255.1 MITS00000000 SAMN02368303 70 5,028,824 144 4,585
CFSAN011194 CDC_K5073 Clinical MD 10-Mar-07 O3:K56 ST750 SRR1118625 GCA_001728275.1 MITT00000000 SAMN02368304 85 5,082,152 117 4,604
CFSAN011195 CDC_K5125 Clinical MS 11-Jun-07 O3:Kuk ST772 SRR1840760 GCA_001728295.1 MITU00000000 SAMN02368305 71 5,134,866 134 4,699
CFSAN011196 CDC_K5126 Clinical MS 21-May-07 O3:Kuk ST1131 SRR1118624 GCA_001728325.1 MITV00000000 SAMN02368306 112 5,143,760 152 4,680
CFSAN011197 CDC_K5276 Clinical NY 20-Apr-07 O11:Kuk ST631 SRR1118623 GCA_001728335.1 MITW00000000 SAMN02368307 86 5,168,475 136 4,774
CFSAN011198 CDC_K5277 Clinical WA No date reported O1:Kuk ST65 SRR1118622 GCA_001728345.1 MITX00000000 SAMN02368308 71 5,165,700 109 4,699
CFSAN011199 CDC_K5278 Clinical WA 25-Jun-07 O4:K12 ST36 SRR1118621 GCA_001728405.1 MITY00000000 SAMN02368309 69 5,067,491 112 4,639
CFSAN011200 CDC_K5279 Clinical WA No date reported O1:Kuk ST65 SRR1118620 GCA_001727655.1 MITZ00000000 SAMN02368310 76 5,172,883 93 4,683
CFSAN011201 CDC_K5280 Clinical WA 11-Jul-07 O4:K12 ST36 SRR1118619 GCA_001727625.1 MIUA00000000 SAMN02368311 87 5,083,288 110 4,662
CFSAN011202 CDC_K5281 Clinical WA 13-Jul-07 O4:K12 ST36 SRR1118618 GCA_001727575.1 MIUB00000000 SAMN02368312 102 5,077,351 115 4,661
CFSAN011203 CDC_K5282 Clinical HI 24-May-07 O5:Kuk Untyped SRR1118617 GCA_001727545.1 MIUC00000000 SAMN02368313 50 4,963,427 79 4,506
CFSAN011204 CDC_K5306 Clinical GA 23-Jul-07 O4:K9 ST34 SRR1118616 GCA_001727505.1 MIUD00000000 SAMN02368314 122 5,045,861 117 4,636
CFSAN011205 CDC_K5308 Clinical AK 14-May-07 O4:K63 ST36 SRR1118615 GCA_001727485.1 MIUE00000000 SAMN02368315 138 5,095,192 142 4,669
CFSAN011206 CDC_K5323-1 Clinical VA No date reported O5:K17 ST674 SRR1118614 GCA_001727475.1 MIUF00000000 SAMN02368316 30 5,220,531 98 4,795
CFSAN011207 CDC_K5323-2 Clinical VA No date reported O5:Kuk ST674 SRR1118613 GCA_001727415.1 MIUG00000000 SAMN02368317 57 5,207,450 84 4,779
CFSAN011208 CDC_K5324-1 Clinical VA 17-Jun-07 O1:K20 ST1132 SRR1118612 GCA_001727395.1 MIUH00000000 SAMN02368318 56 5,272,305 294 4,941
CFSAN011209 CDC_K5324-2 Clinical VA 17-Jun-07 O1:K20 ST1132 SRR1118611 GCA_001727405.1 MIUI00000000 SAMN02368319 70 5,060,178 174 4,654
CFSAN011210 CDC_K5328 Clinical IN No date reported O4:K12 ST36 SRR1118610 GCA_001727665.1 MIUJ00000000 SAMN02368320 85 5,090,169 118 4,661
CFSAN011211 CDC_K5330 Clinical TX 23-Apr-07 O5:Kuk ST1713 SRR1815543 GCA_001728375.1 MIUK00000000 SAMN03358832 43 5,168,109 142 4,757
CFSAN011212 CDC_K5331 Clinical GA 8-Aug-07 O4:K8 ST265 SRR1118609 GCA_001728425.1 MIUL00000000 SAMN02368321 90 5,067,258 95 4,631
CFSAN011213 CDC_K5345-1 Clinical IA 7-Aug-07 O4:K12 ST36 SRR1840759 GCA_001728465.1 MIUM00000000 SAMN02368322 49 5,148,490 112 4,719
CFSAN011214 CDC_K5345-2 Clinical IA 7-Aug-07 O4:K12 ST36 SRR1118608 GCA_001728485.1 MIUN00000000 SAMN02368323 70 5,125,535 105 4,687
CFSAN011215 CDC_K5346 Clinical PA 21-Aug-07 O4:K12 ST36 SRR1815544 GCA_001728415.1 MIUO00000000 SAMN03358833 53 5,087,978 126 4,661
CFSAN011216 CDC_K5428 Clinical NV 6-Jul-07 O1:Kuk ST199 SRR1815545 GCA_001727645.1 MIUP00000000 SAMN03358834 20 5,092,714 139 4,639
CFSAN011217 CDC_K5429 Clinical NV 9-Aug-07 O4:K12 ST36 SRR1118607 GCA_001727585.1 MIUQ00000000 SAMN02368324 111 5,079,150 118 4,653
CFSAN011218 CDC_K5433 Clinical WA 24-Jul-07 O4:Kuk ST36 SRR1118606 GCA_001727385.1 MIUR00000000 SAMN02368325 47 5,073,057 118 4,635
CFSAN011219 CDC_K5435 Clinical WA 11-Aug-07 O1:Kuk ST65 SRR1118605 GCA_001727465.1 MIUS00000000 SAMN02368326 73 5,168,466 105 4,718
CFSAN011221 CDC_K5437 Clinical WA 2-Sep-07 O4:Kuk ST36 SRR1118604 GCA_001727565.1 MIUT00000000 SAMN02368328 122 5,068,632 126 4,636
CFSAN011222 CDC_K5438 Clinical WA 9-Sep-07 O1:Kuk ST65 SRR1118603 GCA_001727705.1 MIUU00000000 SAMN02368329 114 5,154,409 123 4,705
CFSAN011223 CDC_K5439 Clinical WA 19-Sep-07 O4:K8 ST189 SRR1118602 GCA_001728495.1 MIUV00000000 SAMN02368330 36 5,031,538 106 4,616
CFSAN011224 CDC_K5456 Clinical WA No date reported O4:Kuk ST36 SRR1118601 GCA_001728545.1 MIUW00000000 SAMN02368331 119 5,080,809 114 4,656
CFSAN011225 CDC_K5457 Clinical WA 7-Aug-07 O4:Kuk ST36 SRR1118600 GCA_001728505.1 MIUX00000000 SAMN02368332 72 5,075,290 98 4,625
CFSAN011226 CDC_K5485 Clinical NC 8-Jul-07 O6:K18 ST50 SRR1815546 GCA_001728565.1 MIUY00000000 SAMN03358835 23 5,151,277 128 4,719
CFSAN011227 CDC_K5512 Clinical OK 14-Jun-07 O4:K12 ST36 SRR1118599 GCA_001728585.1 MIUZ00000000 SAMN02368333 92 5,082,991 122 4,670
CFSAN011228 CDC_K5528 Clinical GA 6-Oct-07 O4:K68 ST3 SRR1118598 GCA_001728625.1 MIVA00000000 SAMN02368334 128 5,101,848 108 4,645
CFSAN011229 CDC_K5579 Clinical IN No date reported O4:K63 ST43 SRR1118597 GCA_001728575.1 MIVB00000000 SAMN02368335 107 5,072,634 169 4,659
CFSAN011230 CDC_K5582 Clinical GA 10-Oct-07 O11:Kuk ST631 SRR1840757 GCA_001728645.1 MIVC00000000 SAMN02368336 54 5,174,332 104 4,798
CFSAN011232 CDC_K5618 Clinical NY 16-Aug-07 O10:Kuk ST636 SRR1815547 GCA_001728655.1 MIVD00000000 SAMN03358836 25 5,107,768 147 4,668
CFSAN011233 CDC_K5620 Clinical NY 23-Aug-07 O10:Kuk ST636 SRR1815548 GCA_001728665.1 MIVE00000000 SAMN03358837 24 5,099,609 131 4,658
CFSAN011235 CDC_K5629 Clinical GA 18-Nov-07 O4:K13 ST36 SRR1118596 GCA_001728695.1 MIVF00000000 SAMN02368339 106 5,077,945 119 4,659
CFSAN011236 CDC_K5635 Clinical MD 3-Sep-07 O5:K30 ST753 SRR1118595 GCA_001728725.1 MIVG00000000 SAMN02368340 118 5,070,117 110 4,636
CFSAN011237 CDC_K5638 Clinical MD No date reported O4:K12 ST36 SRR1815549 GCA_001728745.1 MIVH00000000 SAMN03358838 29 5,144,324 125 4,733
CFSAN011238 CDC_K5701 Clinical OR 9-Sep-07 O1:Kuk ST65 SRR1815550 GCA_001728755.1 MIVI00000000 SAMN03358839 24 5,157,591 93 4,707
CFSAN011096 GCSL_R5 Oyster TX 14-Mar-07 O10:Kuk ST1133 SRR1815527 GCA_001726165.1 MIQI00000000 SAMN03358816 43 5,185,921 95 4,792
CFSAN011097 GCSL_R6 Oyster TX 14-Mar-07 O10:Kuk ST1133 SRR1118691 GCA_001726265.1 MIQJ00000000 SAMN02368223 80 5,087,599 107 4,659
CFSAN011098 GCSL_R7 Oyster TX 14-Mar-07 O10:Kuk ST1134 SRR1840772 GCA_001726195.1 MIQK00000000 SAMN02368224 44 5,052,796 138 4,640
CFSAN011099 GCSL_R8 Oyster TX 14-Mar-07 O10:Kuk ST1134 SRR1118690 GCA_001726185.1 MIQL00000000 SAMN02368225 52 5,200,929 119 4,807
CFSAN011100 GCSL_R10 Oyster FL 19-Mar-07 O1:Kuk ST313 SRR1815528 GCA_001726175.1 MIQM00000000 SAMN03358817 38 5,072,012 158 4,665
CFSAN011101 GCSL_R12 Oyster LA 27-Mar-07 O4:K8 ST32 SRR1118689 GCA_001726245.1 MIQN00000000 SAMN02368226 43 5,051,895 116 4,618
CFSAN011102 GCSL_R13 Oyster LA 27-Mar-07 O4:K10 ST732 SRR1118688 GCA_001726255.1 MIQO00000000 SAMN02368227 135 5,122,134 161 4,694
CFSAN011103 GCSL_R16 Oyster FL 30-Apr-07 O4:K9 ST34 SRR1118687 GCA_001726345.1 MIQP00000000 SAMN02368228 56 5,051,817 114 4,638
CFSAN011104 GCSL_R17 Oyster FL 30-Apr-07 O4:Kuk ST536 SRR1118686 GCA_001726275.1 MIQQ00000000 SAMN02368229 60 5,010,966 100 4,576
CFSAN011105 GCSL_R21 Oyster TX 4-May-07 O5:Kuk ST12 SRR1118685 GCA_001726355.1 MIQR00000000 SAMN02368230 56 5,124,206 80 4,685
CFSAN011106 GCSL_R26 Oyster NJ 16-Jun-07 O4:K8 ST32 SRR1118684 GCA_001726335.1 MIQS00000000 SAMN02368231 119 5,067,308 134 4,629
CFSAN011107 GCSL_R29 Oyster FL 27-May-07 O11:Kuk ST734 SRR1118683 GCA_001726325.1 MIQT00000000 SAMN02368232 40 4,946,371 104 4,525
CFSAN011108 GCSL_R30 Oyster FL 27-May-07 O1:Kuk ST23 SRR1118682 GCA_001726405.1 MIQU00000000 SAMN02368233 45 5,132,857 131 4,724
CFSAN011109 GCSL_R31 Oyster LA 27-May-07 O1:Kuk ST23 SRR1118681 GCA_001726415.1 MIQV00000000 SAMN02368234 102 5,126,812 132 4,710
CFSAN011110 GCSL_R32 Oyster LA 30-May-07 O10:Kuk ST1142 SRR1057384 GCA_001726445.1 MIQW00000000 SAMN02368235 27 5,059,594 105 4,607
CFSAN011111 GCSL_R33 Oyster LA 30-May-07 O3:Kuk ST28 SRR1118680 GCA_001726435.1 MIQX00000000 SAMN02368236 109 5,043,795 94 4,586
CFSAN011112 GCSL_R42 Oyster WA 26-Jul-07 O10:Kuk ST1155 SRR1815529 GCA_001726485.1 MIQY00000000 SAMN03358818 39 4,981,892 105 4,522
CFSAN011113 GCSL_R45 Oyster WA Jun/Jul-07 (exact date unknown) O5:Kuk ST61 SRR1118679 GCA_001726495.1 MIQZ00000000 SAMN02368237 130 4,973,945 101 4,533
CFSAN011114 GCSL_R47 Oyster AL 20-Apr-07 O4:K8 ST32 SRR1118678 GCA_001726515.1 MIRA00000000 SAMN02368238 66 5,064,518 151 4,653
CFSAN011115 GCSL_R51 Oyster AL 6-Jul-07 O8:Kuk ST676 SRR1815530 GCA_001726535.1 MIRB00000000 SAMN03358819 34 5,049,334 105 4,632
CFSAN011116 GCSL_R52 Oyster WA 13-Jul-07 O3:Kuk ST735 SRR1118677 GCA_001726565.1 MIRC00000000 SAMN02368239 84 5,189,100 86 4,693
CFSAN011117 GCSL_R53 Oyster WA 13-Jul-07 O3:Kuk ST735 SRR1118676 GCA_001726575.1 MIRD00000000 SAMN02368240 68 5,191,609 101 4,715
CFSAN011118 GCSL_R54 Oyster WA 13-Jul-07 O3:Kuk ST735 SRR1118675 GCA_001726595.1 MIRE00000000 SAMN02368241 48 5,189,492 96 4,715
CFSAN011119 GCSL_R55 Oyster WA 14-Jul-07 O3:Kuk ST735 SRR1118674 GCA_001726615.1 MIRF00000000 SAMN02368242 62 5,191,687 100 4,718
CFSAN011120 GCSL_R56 Oyster WA 14-Jul-07 O3:Kuk ST735 SRR1118673 GCA_001726655.1 MIRG00000000 SAMN02368243 111 5,191,187 101 4,715
CFSAN011121 GCSL_R57 Oyster WA 14-Jul-07 O3:Kuk ST1148 SRR1118672 GCA_001726645.1 MIRH00000000 SAMN02368244 72 5,100,768 101 4,652
CFSAN011122 GCSL_R59 Oyster ME 23-Jul-07 O5:Kuk ST113 SRR1815531 GCA_001726685.1 MIRI00000000 SAMN03358820 38 4,953,641 128 4,512
CFSAN011123 GCSL_R60 Oyster ME 23-Jul-07 O10:Kuk ST1135 SRR1118671 GCA_001726695.1 MIRJ00000000 SAMN02368245 77 5,264,840 126 4,802
CFSAN011125 GCSL_R62 Oyster ME 23-Jul-07 O1:Kuk ST1136 SRR1840771 GCA_001726725.1 MIRK00000000 SAMN02368247 34 5,176,254 126 4,777
CFSAN011126 GCSL_R63 Oyster ME 23-Jul-07 O4:Kuk Untyped SRR1118669 GCA_001726735.1 MIRL00000000 SAMN02368248 44 5,125,149 102 4,684
CFSAN011128 GCSL_R65 Oyster ME 23-Jul-07 O5:Kuk ST1150 SRR1118668 GCA_001726755.1 MIRM00000000 SAMN02368250 46 5,065,957 111 4,652
CFSAN011129 GCSL_R74 Oyster VA 23-Aug-07 O4:K34 ST108 SRR1118667 GCA_001726775.1 MIRN00000000 SAMN02368251 90 5,041,370 100 4,605
CFSAN011130 GCSL_R75 Oyster VA 23-Aug-07 O8:Kuk ST676 SRR1118666 GCA_001726805.1 MIRO00000000 SAMN02368252 84 5,014,250 87 4,578
CFSAN011131 GCSL_R76 Oyster VA 23-Aug-07 O8:Kuk ST676 SRR1118665 GCA_001726815.1 MIRP00000000 SAMN02368253 108 5,017,829 82 4,588
CFSAN011132 GCSL_R77 Oyster VA 23-Aug-07 O8:Kuk ST676 SRR1118664 GCA_001726845.1 MIRQ00000000 SAMN02368254 74 5,014,463 76 4,581
CFSAN011133 GCSL_R86 Oyster FL 13-Aug-07 O6:Kuk ST737 SRR1118663 GCA_001726885.1 MIRR00000000 SAMN02368255 70 4,894,547 116 4,454
CFSAN011134 GCSL_R87 Oyster FL 13-Aug-07 O8:K70 ST320 SRR1118662 GCA_001726855.1 MIRS00000000 SAMN02368256 57 5,180,717 111 4,794
CFSAN011135 GCSL_R88 Oyster FL 13-Aug-07 O8:K70 ST320 SRR1840769 GCA_001726895.1 MIRT00000000 SAMN02368257 34 5,184,181 90 4,781
CFSAN011137 GCSL_R95 Oyster PEI 31-Jul-07 O3:K5 ST1151 SRR1118660 GCA_001726915.1 MIRU00000000 SAMN02368259 44 5,123,173 103 4,657
CFSAN011138 GCSL_R96 Oyster PEI 31-Jul-07 O11:Kuk ST1152 SRR1815532 GCA_001726935.1 MIRV00000000 SAMN03358821 41 4,931,576 111 4,466
CFSAN011140 GCSL_R98 Oyster PEI 31-Jul-07 O3:K5 ST1151 SRR1815533 GCA_001726965.1 MIRW00000000 SAMN03358822 41 5,125,449 102 4,676
CFSAN011141 GCSL_R99 Oyster PEI 31-Jul-07 O3:K5 ST1151 SRR1118658 GCA_001726985.1 MIRX00000000 SAMN02368261 74 5,120,561 96 4,647
CFSAN011143 GCSL_R108 Oyster PEI 31-Jul-07 O3:K5 ST1151 SRR1815534 GCA_001726975.1 MIRY00000000 SAMN03358823 68 5,156,159 93 4,700
CFSAN011144 GCSL_R109 Oyster PEI 31-Jul-07 O3:K5 ST1151 SRR1840768 GCA_001727025.1 MIRZ00000000 SAMN02368263 34 5,124,297 93 4,665
CFSAN011145 GCSL_R110 Oyster PEI 31-Jul-07 O3:K5 ST1151 SRR1815535 GCA_001727055.1 MISA00000000 SAMN03358824 54 5,123,801 96 4,673
CFSAN011146 GCSL_R111 Oyster PEI 31-Jul-07 O11:Kuk ST1152 SRR1118656 GCA_001727065.1 MISB00000000 SAMN02368264 102 4,925,276 95 4,459
CFSAN011147 GCSL_R125 Oyster FL 14-Oct-07 O11:Kuk ST739 SRR1118655 GCA_001727045.1 MISC00000000 SAMN02368265 138 5,078,459 150 4,628
CFSAN011148 GCSL_R126 Oyster FL 14-Oct-07 O4:K42 ST1146 SRR1118654 GCA_001727105.1 MISD00000000 SAMN02368266 103 5,138,446 115 4,714
CFSAN011149 GCSL_R129 Oyster FL 1-Oct-07 O11:Kuk ST1153 SRR1118653 GCA_001727115.1 MISE00000000 SAMN02368267 71 4,897,642 115 4,452
CFSAN011150 GCSL_R130 Oyster FL 1-Oct-07 O4:K37 ST1140 SRR1118652 GCA_001975475.1 MUCG00000000 SAMN02368268 76 5,057,199 108 4,594
CFSAN011151 GCSL_R131 Oyster FL 1-Oct-07 O10:Kuk ST1141 SRR1840767 GCA_001727125.1 MISF00000000 SAMN02368269 41 5,140,538 132 4,688
CFSAN011152 GCSL_R135 Oyster SC 21-Nov-07 O3:Kuk ST741 SRR1840766 GCA_001727155.1 MISG00000000 SAMN02368270 34 5,066,023 141 4,634
CFSAN011153 GCSL_R136 Oyster SC 21-Nov-07 O1:K20 ST775 SRR1118651 GCA_001727185.1 MISH00000000 SAMN02368271 78 5,098,402 139 4,651
CFSAN011154 GCSL_R137 Oyster SC 21-Nov-07 O1:K20 ST775 SRR1118650 GCA_001727195.1 MISI00000000 SAMN02368272 71 5,107,378 127 4,638
CFSAN011155 GCSL_R138 Oyster SC 21-Nov-07 O1:K20 ST775 SRR1118649 GCA_001727205.1 MISJ00000000 SAMN02368273 65 5,108,840 148 4,657
CFSAN011156 GCSL_R143 Oyster FL Nov-07 (exact date unknown) O5:Kuk ST743 SRR1118648 GCA_001727265.1 MISK00000000 SAMN02368274 280 4,947,784 148 4,510
CFSAN011157 GCSL_R144 Oyster FL Nov-07 (exact date unknown) O5:Kuk ST1149 SRR1815536 GCA_001727275.1 MISL00000000 SAMN03358825 48 5,085,869 181 4,641
CFSAN011158 GCSL_R145 Oyster FL Nov-07 (exact date unknown) O5:Kuk ST1149 SRR1118647 GCA_001727295.1 MISM00000000 SAMN02368275 64 5,074,938 156 4,624
CFSAN011159 GCSL_R146 Oyster FL Nov-07 (exact date unknown) O5:Kuk ST1149 SRR1815537 GCA_001727245.1 MISN00000000 SAMN03358826 50 5,084,933 172 4,649
CFSAN011160 GCSL_R149 Oyster FL 19-Mar-07 O1:Kuk ST313 SRR1118646 GCA_001727305.1 MISO00000000 SAMN02368276 61 5,067,880 152 4,641
CFSAN011161 GCSL_R150 Oyster FL 19-Mar-07 O1:Kuk ST313 SRR1118645 GCA_001727345.1 MISP00000000 SAMN02368277 25 5,066,369 149 4,663
a

The state for oyster isolates is the state where the product was harvested; for clinical isolates, this is the state that reported the isolate/illness. PEI, Prince Edward Island.

b

The date for oyster isolates is the date of harvest of the product; for clinical isolates, this is the date of isolation from the patient.