TABLE 1.
CFSAN ID | Strain ID | Source | State or provincea | Date of isolation (day-mo-yr)b | Serotype | Sequence type | SRA accession no. | GenBank assembly ID | GenBank accession no. | BioSample accession no. | Coverage depth (%) | Total length (bp) | No. of contigs | No. of genes |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CFSAN011163 | CDC_K4556-2 | Clinical | LA | 23-Oct-06 | O1:Kuk | ST744 | SRR1118644 | GCA_001727365.1 | MISQ00000000 | SAMN02368278 | 74 | 5,149,094 | 135 | 4,735 |
CFSAN011164 | CDC_K4557 | Clinical | LA | 19-Sep-06 | O1:K33 | ST799 | SRR1840765 | GCA_001727725.1 | MISR00000000 | SAMN02368279 | 35 | 5,074,019 | 94 | 4,619 |
CFSAN011165 | CDC_K4558-1 | Clinical | LA | 28-Aug-06 | O3:K39 | ST1143 | SRR1118643 | GCA_001727735.1 | MISS00000000 | SAMN02368280 | 34 | 5,032,007 | 120 | 4,611 |
CFSAN011166 | CDC_K4558-2 | Clinical | LA | 28-Aug-06 | O3:Kuk | ST636 | SRR1118642 | GCA_001727745.1 | MIST00000000 | SAMN02368281 | 88 | 5,335,587 | 155 | 4,897 |
CFSAN011167 | CDC_K4588 | Clinical | ME | 26-Jul-06 | O5:Kuk | ST746 | SRR1118641 | GCA_001727775.1 | MISU00000000 | SAMN02368282 | 57 | 5,014,336 | 118 | 4,610 |
CFSAN011168 | CDC_K4636 | Clinical | NY | 25-Sep-06 | O10:Kuk | ST636 | SRR1815538 | GCA_001727805.1 | MISV00000000 | SAMN03358827 | 35 | 5,340,949 | 138 | 4,889 |
CFSAN011169 | CDC_K4637-1 | Clinical | NY | 1-Oct-06 | O3:K6 | ST3 | SRR1815539 | GCA_001727815.1 | MISW00000000 | SAMN03358828 | 59 | 5,163,379 | 150 | 4,755 |
CFSAN011170 | CDC_K4637-2 | Clinical | NY | 1-Oct-06 | O3:K6 | ST3 | SRR1815540 | GCA_001727825.1 | MISX00000000 | SAMN03358829 | 59 | 5,156,414 | 133 | 4,740 |
CFSAN011171 | CDC_K4638 | Clinical | NY | 25-Sep-06 | O10:Kuk | ST809 | SRR1118640 | GCA_001727845.1 | MISY00000000 | SAMN02368283 | 47 | 5,077,332 | 96 | 4,619 |
CFSAN011172 | CDC_K4639-1 | Clinical | NY | 16-Oct-06 | O4:K12 | ST36 | SRR1815541 | GCA_001727895.1 | MISZ00000000 | SAMN03358830 | 61 | 5,092,291 | 122 | 4,654 |
CFSAN011173 | CDC_K4639-2 | Clinical | NY | 16-Oct-06 | O4:Kuk | ST36 | SRR1118639 | GCA_001727885.1 | MITA00000000 | SAMN02368284 | 57 | 5,078,734 | 114 | 4,658 |
CFSAN011175 | CDC_K4762 | Clinical | VA | 15-Aug-06 | O5:K17 | ST674 | SRR1118637 | GCA_001727925.1 | MITB00000000 | SAMN02368286 | 78 | 5,103,196 | 108 | 4,676 |
CFSAN011176 | CDC_K4763 | Clinical | VA | 25-Aug-06 | O5:Kuk | Untyped | SRR1840764 | GCA_001727915.1 | MITC00000000 | SAMN02368287 | 43 | 5,287,071 | 129 | 4,843 |
CFSAN011177 | CDC_K4764-1 | Clinical | VA | 13-Oct-06 | O8:K41 | Untyped | SRR1815542 | GCA_001727965.1 | MITE00000000 | SAMN03358831 | 43 | 5,276,586 | 114 | 4,813 |
CFSAN011178 | CDC_K4764-2 | Clinical | VA | 13-Oct-06 | O8:K41 | ST1156 | SRR1118636 | GCA_001727975.1 | MITD00000000 | SAMN02368288 | 52 | 5,033,430 | 111 | 4,616 |
CFSAN011179 | CDC_K4775 | Clinical | GA | 24-Feb-07 | O3:K6 | ST3 | SRR1118635 | GCA_001728005.1 | MITF00000000 | SAMN02368289 | 71 | 5,158,365 | 121 | 4,699 |
CFSAN011180 | CDC_K4842 | Clinical | MD | 16-Oct-06 | O5:K47 | ST1144 | SRR1118634 | GCA_001727995.1 | MITG00000000 | SAMN02368290 | 47 | 5,194,684 | 115 | 4,791 |
CFSAN011181 | CDC_K4857-1 | Clinical | HI | 28-Jan-07 | O5:K17 | ST79 | SRR1118633 | GCA_001728045.1 | MITH00000000 | SAMN02368291 | 37 | 5,038,683 | 103 | 4,569 |
CFSAN011182 | CDC_K4857-2 | Clinical | HI | 28-Jan-07 | O5:Kuk | ST79 | SRR1118632 | GCA_001728065.1 | MITI00000000 | SAMN02368292 | 47 | 5,039,775 | 108 | 4,592 |
CFSAN011183 | CDC_K4858 | Clinical | HI | 15-Sep-06 | O4:K4 | ST283 | SRR1840763 | GCA_001728085.1 | MITJ00000000 | SAMN02368293 | 56 | 4,961,237 | 89 | 4,534 |
CFSAN011184 | CDC_K4859 | Clinical | HI | 15-Feb-07 | O6:K18 | Untyped | SRR1118631 | GCA_001728095.1 | MITK00000000 | SAMN02368294 | 192 | 5,180,859 | 107 | 4,732 |
CFSAN011185 | CDC_K4981 | Clinical | OK | 12-Mar-07 | O1:Kuk | ST748 | SRR1118630 | GCA_001728125.1 | MITL00000000 | SAMN02368295 | 118 | 4,928,549 | 135 | 4,500 |
CFSAN011187 | CDC_K5009-2 | Clinical | MA | 7-Aug-06 | O4:K53 | ST749 | SRR1118629 | GCA_001728135.1 | MITM00000000 | SAMN02368297 | 94 | 5,125,537 | 130 | 4,681 |
CFSAN011188 | CDC_K5010-1 | Clinical | MA | 16-Sep-06 | O1:Kuk | ST3 | SRR1118628 | GCA_001728155.1 | MITN00000000 | SAMN02368298 | 59 | 5,122,961 | 146 | 4,694 |
CFSAN011189 | CDC_K5010-2 | Clinical | MA | 16-Sep-06 | O1:Kuk | ST3 | SRR1118627 | GCA_001728175.1 | MITO00000000 | SAMN02368299 | 94 | 5,118,895 | 134 | 4,676 |
CFSAN011190 | CDC_K5058 | Clinical | TX | 15-May-07 | O3:K6 | ST3 | SRR1057385 | GCA_001728205.1 | MITP00000000 | SAMN02368300 | 60 | 5,114,568 | 84 | 4,620 |
CFSAN011191 | CDC_K5059-1 | Clinical | TX | 10-May-07 | O5:Kuk | ST1147 | SRR1840761 | GCA_001728215.1 | MITQ00000000 | SAMN02368301 | 83 | 4,959,751 | 80 | 4,543 |
CFSAN011192 | CDC_K5059-2 | Clinical | TX | 10-May-07 | O5:Kuk | ST1147 | SRR1057386 | GCA_001728235.1 | MITR00000000 | SAMN02368302 | 458 | 4,953,954 | 123 | 4,513 |
CFSAN011193 | CDC_K5067 | Clinical | SD | 28-Apr-07 | O1:K56 | ST775 | SRR1118626 | GCA_001728255.1 | MITS00000000 | SAMN02368303 | 70 | 5,028,824 | 144 | 4,585 |
CFSAN011194 | CDC_K5073 | Clinical | MD | 10-Mar-07 | O3:K56 | ST750 | SRR1118625 | GCA_001728275.1 | MITT00000000 | SAMN02368304 | 85 | 5,082,152 | 117 | 4,604 |
CFSAN011195 | CDC_K5125 | Clinical | MS | 11-Jun-07 | O3:Kuk | ST772 | SRR1840760 | GCA_001728295.1 | MITU00000000 | SAMN02368305 | 71 | 5,134,866 | 134 | 4,699 |
CFSAN011196 | CDC_K5126 | Clinical | MS | 21-May-07 | O3:Kuk | ST1131 | SRR1118624 | GCA_001728325.1 | MITV00000000 | SAMN02368306 | 112 | 5,143,760 | 152 | 4,680 |
CFSAN011197 | CDC_K5276 | Clinical | NY | 20-Apr-07 | O11:Kuk | ST631 | SRR1118623 | GCA_001728335.1 | MITW00000000 | SAMN02368307 | 86 | 5,168,475 | 136 | 4,774 |
CFSAN011198 | CDC_K5277 | Clinical | WA | No date reported | O1:Kuk | ST65 | SRR1118622 | GCA_001728345.1 | MITX00000000 | SAMN02368308 | 71 | 5,165,700 | 109 | 4,699 |
CFSAN011199 | CDC_K5278 | Clinical | WA | 25-Jun-07 | O4:K12 | ST36 | SRR1118621 | GCA_001728405.1 | MITY00000000 | SAMN02368309 | 69 | 5,067,491 | 112 | 4,639 |
CFSAN011200 | CDC_K5279 | Clinical | WA | No date reported | O1:Kuk | ST65 | SRR1118620 | GCA_001727655.1 | MITZ00000000 | SAMN02368310 | 76 | 5,172,883 | 93 | 4,683 |
CFSAN011201 | CDC_K5280 | Clinical | WA | 11-Jul-07 | O4:K12 | ST36 | SRR1118619 | GCA_001727625.1 | MIUA00000000 | SAMN02368311 | 87 | 5,083,288 | 110 | 4,662 |
CFSAN011202 | CDC_K5281 | Clinical | WA | 13-Jul-07 | O4:K12 | ST36 | SRR1118618 | GCA_001727575.1 | MIUB00000000 | SAMN02368312 | 102 | 5,077,351 | 115 | 4,661 |
CFSAN011203 | CDC_K5282 | Clinical | HI | 24-May-07 | O5:Kuk | Untyped | SRR1118617 | GCA_001727545.1 | MIUC00000000 | SAMN02368313 | 50 | 4,963,427 | 79 | 4,506 |
CFSAN011204 | CDC_K5306 | Clinical | GA | 23-Jul-07 | O4:K9 | ST34 | SRR1118616 | GCA_001727505.1 | MIUD00000000 | SAMN02368314 | 122 | 5,045,861 | 117 | 4,636 |
CFSAN011205 | CDC_K5308 | Clinical | AK | 14-May-07 | O4:K63 | ST36 | SRR1118615 | GCA_001727485.1 | MIUE00000000 | SAMN02368315 | 138 | 5,095,192 | 142 | 4,669 |
CFSAN011206 | CDC_K5323-1 | Clinical | VA | No date reported | O5:K17 | ST674 | SRR1118614 | GCA_001727475.1 | MIUF00000000 | SAMN02368316 | 30 | 5,220,531 | 98 | 4,795 |
CFSAN011207 | CDC_K5323-2 | Clinical | VA | No date reported | O5:Kuk | ST674 | SRR1118613 | GCA_001727415.1 | MIUG00000000 | SAMN02368317 | 57 | 5,207,450 | 84 | 4,779 |
CFSAN011208 | CDC_K5324-1 | Clinical | VA | 17-Jun-07 | O1:K20 | ST1132 | SRR1118612 | GCA_001727395.1 | MIUH00000000 | SAMN02368318 | 56 | 5,272,305 | 294 | 4,941 |
CFSAN011209 | CDC_K5324-2 | Clinical | VA | 17-Jun-07 | O1:K20 | ST1132 | SRR1118611 | GCA_001727405.1 | MIUI00000000 | SAMN02368319 | 70 | 5,060,178 | 174 | 4,654 |
CFSAN011210 | CDC_K5328 | Clinical | IN | No date reported | O4:K12 | ST36 | SRR1118610 | GCA_001727665.1 | MIUJ00000000 | SAMN02368320 | 85 | 5,090,169 | 118 | 4,661 |
CFSAN011211 | CDC_K5330 | Clinical | TX | 23-Apr-07 | O5:Kuk | ST1713 | SRR1815543 | GCA_001728375.1 | MIUK00000000 | SAMN03358832 | 43 | 5,168,109 | 142 | 4,757 |
CFSAN011212 | CDC_K5331 | Clinical | GA | 8-Aug-07 | O4:K8 | ST265 | SRR1118609 | GCA_001728425.1 | MIUL00000000 | SAMN02368321 | 90 | 5,067,258 | 95 | 4,631 |
CFSAN011213 | CDC_K5345-1 | Clinical | IA | 7-Aug-07 | O4:K12 | ST36 | SRR1840759 | GCA_001728465.1 | MIUM00000000 | SAMN02368322 | 49 | 5,148,490 | 112 | 4,719 |
CFSAN011214 | CDC_K5345-2 | Clinical | IA | 7-Aug-07 | O4:K12 | ST36 | SRR1118608 | GCA_001728485.1 | MIUN00000000 | SAMN02368323 | 70 | 5,125,535 | 105 | 4,687 |
CFSAN011215 | CDC_K5346 | Clinical | PA | 21-Aug-07 | O4:K12 | ST36 | SRR1815544 | GCA_001728415.1 | MIUO00000000 | SAMN03358833 | 53 | 5,087,978 | 126 | 4,661 |
CFSAN011216 | CDC_K5428 | Clinical | NV | 6-Jul-07 | O1:Kuk | ST199 | SRR1815545 | GCA_001727645.1 | MIUP00000000 | SAMN03358834 | 20 | 5,092,714 | 139 | 4,639 |
CFSAN011217 | CDC_K5429 | Clinical | NV | 9-Aug-07 | O4:K12 | ST36 | SRR1118607 | GCA_001727585.1 | MIUQ00000000 | SAMN02368324 | 111 | 5,079,150 | 118 | 4,653 |
CFSAN011218 | CDC_K5433 | Clinical | WA | 24-Jul-07 | O4:Kuk | ST36 | SRR1118606 | GCA_001727385.1 | MIUR00000000 | SAMN02368325 | 47 | 5,073,057 | 118 | 4,635 |
CFSAN011219 | CDC_K5435 | Clinical | WA | 11-Aug-07 | O1:Kuk | ST65 | SRR1118605 | GCA_001727465.1 | MIUS00000000 | SAMN02368326 | 73 | 5,168,466 | 105 | 4,718 |
CFSAN011221 | CDC_K5437 | Clinical | WA | 2-Sep-07 | O4:Kuk | ST36 | SRR1118604 | GCA_001727565.1 | MIUT00000000 | SAMN02368328 | 122 | 5,068,632 | 126 | 4,636 |
CFSAN011222 | CDC_K5438 | Clinical | WA | 9-Sep-07 | O1:Kuk | ST65 | SRR1118603 | GCA_001727705.1 | MIUU00000000 | SAMN02368329 | 114 | 5,154,409 | 123 | 4,705 |
CFSAN011223 | CDC_K5439 | Clinical | WA | 19-Sep-07 | O4:K8 | ST189 | SRR1118602 | GCA_001728495.1 | MIUV00000000 | SAMN02368330 | 36 | 5,031,538 | 106 | 4,616 |
CFSAN011224 | CDC_K5456 | Clinical | WA | No date reported | O4:Kuk | ST36 | SRR1118601 | GCA_001728545.1 | MIUW00000000 | SAMN02368331 | 119 | 5,080,809 | 114 | 4,656 |
CFSAN011225 | CDC_K5457 | Clinical | WA | 7-Aug-07 | O4:Kuk | ST36 | SRR1118600 | GCA_001728505.1 | MIUX00000000 | SAMN02368332 | 72 | 5,075,290 | 98 | 4,625 |
CFSAN011226 | CDC_K5485 | Clinical | NC | 8-Jul-07 | O6:K18 | ST50 | SRR1815546 | GCA_001728565.1 | MIUY00000000 | SAMN03358835 | 23 | 5,151,277 | 128 | 4,719 |
CFSAN011227 | CDC_K5512 | Clinical | OK | 14-Jun-07 | O4:K12 | ST36 | SRR1118599 | GCA_001728585.1 | MIUZ00000000 | SAMN02368333 | 92 | 5,082,991 | 122 | 4,670 |
CFSAN011228 | CDC_K5528 | Clinical | GA | 6-Oct-07 | O4:K68 | ST3 | SRR1118598 | GCA_001728625.1 | MIVA00000000 | SAMN02368334 | 128 | 5,101,848 | 108 | 4,645 |
CFSAN011229 | CDC_K5579 | Clinical | IN | No date reported | O4:K63 | ST43 | SRR1118597 | GCA_001728575.1 | MIVB00000000 | SAMN02368335 | 107 | 5,072,634 | 169 | 4,659 |
CFSAN011230 | CDC_K5582 | Clinical | GA | 10-Oct-07 | O11:Kuk | ST631 | SRR1840757 | GCA_001728645.1 | MIVC00000000 | SAMN02368336 | 54 | 5,174,332 | 104 | 4,798 |
CFSAN011232 | CDC_K5618 | Clinical | NY | 16-Aug-07 | O10:Kuk | ST636 | SRR1815547 | GCA_001728655.1 | MIVD00000000 | SAMN03358836 | 25 | 5,107,768 | 147 | 4,668 |
CFSAN011233 | CDC_K5620 | Clinical | NY | 23-Aug-07 | O10:Kuk | ST636 | SRR1815548 | GCA_001728665.1 | MIVE00000000 | SAMN03358837 | 24 | 5,099,609 | 131 | 4,658 |
CFSAN011235 | CDC_K5629 | Clinical | GA | 18-Nov-07 | O4:K13 | ST36 | SRR1118596 | GCA_001728695.1 | MIVF00000000 | SAMN02368339 | 106 | 5,077,945 | 119 | 4,659 |
CFSAN011236 | CDC_K5635 | Clinical | MD | 3-Sep-07 | O5:K30 | ST753 | SRR1118595 | GCA_001728725.1 | MIVG00000000 | SAMN02368340 | 118 | 5,070,117 | 110 | 4,636 |
CFSAN011237 | CDC_K5638 | Clinical | MD | No date reported | O4:K12 | ST36 | SRR1815549 | GCA_001728745.1 | MIVH00000000 | SAMN03358838 | 29 | 5,144,324 | 125 | 4,733 |
CFSAN011238 | CDC_K5701 | Clinical | OR | 9-Sep-07 | O1:Kuk | ST65 | SRR1815550 | GCA_001728755.1 | MIVI00000000 | SAMN03358839 | 24 | 5,157,591 | 93 | 4,707 |
CFSAN011096 | GCSL_R5 | Oyster | TX | 14-Mar-07 | O10:Kuk | ST1133 | SRR1815527 | GCA_001726165.1 | MIQI00000000 | SAMN03358816 | 43 | 5,185,921 | 95 | 4,792 |
CFSAN011097 | GCSL_R6 | Oyster | TX | 14-Mar-07 | O10:Kuk | ST1133 | SRR1118691 | GCA_001726265.1 | MIQJ00000000 | SAMN02368223 | 80 | 5,087,599 | 107 | 4,659 |
CFSAN011098 | GCSL_R7 | Oyster | TX | 14-Mar-07 | O10:Kuk | ST1134 | SRR1840772 | GCA_001726195.1 | MIQK00000000 | SAMN02368224 | 44 | 5,052,796 | 138 | 4,640 |
CFSAN011099 | GCSL_R8 | Oyster | TX | 14-Mar-07 | O10:Kuk | ST1134 | SRR1118690 | GCA_001726185.1 | MIQL00000000 | SAMN02368225 | 52 | 5,200,929 | 119 | 4,807 |
CFSAN011100 | GCSL_R10 | Oyster | FL | 19-Mar-07 | O1:Kuk | ST313 | SRR1815528 | GCA_001726175.1 | MIQM00000000 | SAMN03358817 | 38 | 5,072,012 | 158 | 4,665 |
CFSAN011101 | GCSL_R12 | Oyster | LA | 27-Mar-07 | O4:K8 | ST32 | SRR1118689 | GCA_001726245.1 | MIQN00000000 | SAMN02368226 | 43 | 5,051,895 | 116 | 4,618 |
CFSAN011102 | GCSL_R13 | Oyster | LA | 27-Mar-07 | O4:K10 | ST732 | SRR1118688 | GCA_001726255.1 | MIQO00000000 | SAMN02368227 | 135 | 5,122,134 | 161 | 4,694 |
CFSAN011103 | GCSL_R16 | Oyster | FL | 30-Apr-07 | O4:K9 | ST34 | SRR1118687 | GCA_001726345.1 | MIQP00000000 | SAMN02368228 | 56 | 5,051,817 | 114 | 4,638 |
CFSAN011104 | GCSL_R17 | Oyster | FL | 30-Apr-07 | O4:Kuk | ST536 | SRR1118686 | GCA_001726275.1 | MIQQ00000000 | SAMN02368229 | 60 | 5,010,966 | 100 | 4,576 |
CFSAN011105 | GCSL_R21 | Oyster | TX | 4-May-07 | O5:Kuk | ST12 | SRR1118685 | GCA_001726355.1 | MIQR00000000 | SAMN02368230 | 56 | 5,124,206 | 80 | 4,685 |
CFSAN011106 | GCSL_R26 | Oyster | NJ | 16-Jun-07 | O4:K8 | ST32 | SRR1118684 | GCA_001726335.1 | MIQS00000000 | SAMN02368231 | 119 | 5,067,308 | 134 | 4,629 |
CFSAN011107 | GCSL_R29 | Oyster | FL | 27-May-07 | O11:Kuk | ST734 | SRR1118683 | GCA_001726325.1 | MIQT00000000 | SAMN02368232 | 40 | 4,946,371 | 104 | 4,525 |
CFSAN011108 | GCSL_R30 | Oyster | FL | 27-May-07 | O1:Kuk | ST23 | SRR1118682 | GCA_001726405.1 | MIQU00000000 | SAMN02368233 | 45 | 5,132,857 | 131 | 4,724 |
CFSAN011109 | GCSL_R31 | Oyster | LA | 27-May-07 | O1:Kuk | ST23 | SRR1118681 | GCA_001726415.1 | MIQV00000000 | SAMN02368234 | 102 | 5,126,812 | 132 | 4,710 |
CFSAN011110 | GCSL_R32 | Oyster | LA | 30-May-07 | O10:Kuk | ST1142 | SRR1057384 | GCA_001726445.1 | MIQW00000000 | SAMN02368235 | 27 | 5,059,594 | 105 | 4,607 |
CFSAN011111 | GCSL_R33 | Oyster | LA | 30-May-07 | O3:Kuk | ST28 | SRR1118680 | GCA_001726435.1 | MIQX00000000 | SAMN02368236 | 109 | 5,043,795 | 94 | 4,586 |
CFSAN011112 | GCSL_R42 | Oyster | WA | 26-Jul-07 | O10:Kuk | ST1155 | SRR1815529 | GCA_001726485.1 | MIQY00000000 | SAMN03358818 | 39 | 4,981,892 | 105 | 4,522 |
CFSAN011113 | GCSL_R45 | Oyster | WA | Jun/Jul-07 (exact date unknown) | O5:Kuk | ST61 | SRR1118679 | GCA_001726495.1 | MIQZ00000000 | SAMN02368237 | 130 | 4,973,945 | 101 | 4,533 |
CFSAN011114 | GCSL_R47 | Oyster | AL | 20-Apr-07 | O4:K8 | ST32 | SRR1118678 | GCA_001726515.1 | MIRA00000000 | SAMN02368238 | 66 | 5,064,518 | 151 | 4,653 |
CFSAN011115 | GCSL_R51 | Oyster | AL | 6-Jul-07 | O8:Kuk | ST676 | SRR1815530 | GCA_001726535.1 | MIRB00000000 | SAMN03358819 | 34 | 5,049,334 | 105 | 4,632 |
CFSAN011116 | GCSL_R52 | Oyster | WA | 13-Jul-07 | O3:Kuk | ST735 | SRR1118677 | GCA_001726565.1 | MIRC00000000 | SAMN02368239 | 84 | 5,189,100 | 86 | 4,693 |
CFSAN011117 | GCSL_R53 | Oyster | WA | 13-Jul-07 | O3:Kuk | ST735 | SRR1118676 | GCA_001726575.1 | MIRD00000000 | SAMN02368240 | 68 | 5,191,609 | 101 | 4,715 |
CFSAN011118 | GCSL_R54 | Oyster | WA | 13-Jul-07 | O3:Kuk | ST735 | SRR1118675 | GCA_001726595.1 | MIRE00000000 | SAMN02368241 | 48 | 5,189,492 | 96 | 4,715 |
CFSAN011119 | GCSL_R55 | Oyster | WA | 14-Jul-07 | O3:Kuk | ST735 | SRR1118674 | GCA_001726615.1 | MIRF00000000 | SAMN02368242 | 62 | 5,191,687 | 100 | 4,718 |
CFSAN011120 | GCSL_R56 | Oyster | WA | 14-Jul-07 | O3:Kuk | ST735 | SRR1118673 | GCA_001726655.1 | MIRG00000000 | SAMN02368243 | 111 | 5,191,187 | 101 | 4,715 |
CFSAN011121 | GCSL_R57 | Oyster | WA | 14-Jul-07 | O3:Kuk | ST1148 | SRR1118672 | GCA_001726645.1 | MIRH00000000 | SAMN02368244 | 72 | 5,100,768 | 101 | 4,652 |
CFSAN011122 | GCSL_R59 | Oyster | ME | 23-Jul-07 | O5:Kuk | ST113 | SRR1815531 | GCA_001726685.1 | MIRI00000000 | SAMN03358820 | 38 | 4,953,641 | 128 | 4,512 |
CFSAN011123 | GCSL_R60 | Oyster | ME | 23-Jul-07 | O10:Kuk | ST1135 | SRR1118671 | GCA_001726695.1 | MIRJ00000000 | SAMN02368245 | 77 | 5,264,840 | 126 | 4,802 |
CFSAN011125 | GCSL_R62 | Oyster | ME | 23-Jul-07 | O1:Kuk | ST1136 | SRR1840771 | GCA_001726725.1 | MIRK00000000 | SAMN02368247 | 34 | 5,176,254 | 126 | 4,777 |
CFSAN011126 | GCSL_R63 | Oyster | ME | 23-Jul-07 | O4:Kuk | Untyped | SRR1118669 | GCA_001726735.1 | MIRL00000000 | SAMN02368248 | 44 | 5,125,149 | 102 | 4,684 |
CFSAN011128 | GCSL_R65 | Oyster | ME | 23-Jul-07 | O5:Kuk | ST1150 | SRR1118668 | GCA_001726755.1 | MIRM00000000 | SAMN02368250 | 46 | 5,065,957 | 111 | 4,652 |
CFSAN011129 | GCSL_R74 | Oyster | VA | 23-Aug-07 | O4:K34 | ST108 | SRR1118667 | GCA_001726775.1 | MIRN00000000 | SAMN02368251 | 90 | 5,041,370 | 100 | 4,605 |
CFSAN011130 | GCSL_R75 | Oyster | VA | 23-Aug-07 | O8:Kuk | ST676 | SRR1118666 | GCA_001726805.1 | MIRO00000000 | SAMN02368252 | 84 | 5,014,250 | 87 | 4,578 |
CFSAN011131 | GCSL_R76 | Oyster | VA | 23-Aug-07 | O8:Kuk | ST676 | SRR1118665 | GCA_001726815.1 | MIRP00000000 | SAMN02368253 | 108 | 5,017,829 | 82 | 4,588 |
CFSAN011132 | GCSL_R77 | Oyster | VA | 23-Aug-07 | O8:Kuk | ST676 | SRR1118664 | GCA_001726845.1 | MIRQ00000000 | SAMN02368254 | 74 | 5,014,463 | 76 | 4,581 |
CFSAN011133 | GCSL_R86 | Oyster | FL | 13-Aug-07 | O6:Kuk | ST737 | SRR1118663 | GCA_001726885.1 | MIRR00000000 | SAMN02368255 | 70 | 4,894,547 | 116 | 4,454 |
CFSAN011134 | GCSL_R87 | Oyster | FL | 13-Aug-07 | O8:K70 | ST320 | SRR1118662 | GCA_001726855.1 | MIRS00000000 | SAMN02368256 | 57 | 5,180,717 | 111 | 4,794 |
CFSAN011135 | GCSL_R88 | Oyster | FL | 13-Aug-07 | O8:K70 | ST320 | SRR1840769 | GCA_001726895.1 | MIRT00000000 | SAMN02368257 | 34 | 5,184,181 | 90 | 4,781 |
CFSAN011137 | GCSL_R95 | Oyster | PEI | 31-Jul-07 | O3:K5 | ST1151 | SRR1118660 | GCA_001726915.1 | MIRU00000000 | SAMN02368259 | 44 | 5,123,173 | 103 | 4,657 |
CFSAN011138 | GCSL_R96 | Oyster | PEI | 31-Jul-07 | O11:Kuk | ST1152 | SRR1815532 | GCA_001726935.1 | MIRV00000000 | SAMN03358821 | 41 | 4,931,576 | 111 | 4,466 |
CFSAN011140 | GCSL_R98 | Oyster | PEI | 31-Jul-07 | O3:K5 | ST1151 | SRR1815533 | GCA_001726965.1 | MIRW00000000 | SAMN03358822 | 41 | 5,125,449 | 102 | 4,676 |
CFSAN011141 | GCSL_R99 | Oyster | PEI | 31-Jul-07 | O3:K5 | ST1151 | SRR1118658 | GCA_001726985.1 | MIRX00000000 | SAMN02368261 | 74 | 5,120,561 | 96 | 4,647 |
CFSAN011143 | GCSL_R108 | Oyster | PEI | 31-Jul-07 | O3:K5 | ST1151 | SRR1815534 | GCA_001726975.1 | MIRY00000000 | SAMN03358823 | 68 | 5,156,159 | 93 | 4,700 |
CFSAN011144 | GCSL_R109 | Oyster | PEI | 31-Jul-07 | O3:K5 | ST1151 | SRR1840768 | GCA_001727025.1 | MIRZ00000000 | SAMN02368263 | 34 | 5,124,297 | 93 | 4,665 |
CFSAN011145 | GCSL_R110 | Oyster | PEI | 31-Jul-07 | O3:K5 | ST1151 | SRR1815535 | GCA_001727055.1 | MISA00000000 | SAMN03358824 | 54 | 5,123,801 | 96 | 4,673 |
CFSAN011146 | GCSL_R111 | Oyster | PEI | 31-Jul-07 | O11:Kuk | ST1152 | SRR1118656 | GCA_001727065.1 | MISB00000000 | SAMN02368264 | 102 | 4,925,276 | 95 | 4,459 |
CFSAN011147 | GCSL_R125 | Oyster | FL | 14-Oct-07 | O11:Kuk | ST739 | SRR1118655 | GCA_001727045.1 | MISC00000000 | SAMN02368265 | 138 | 5,078,459 | 150 | 4,628 |
CFSAN011148 | GCSL_R126 | Oyster | FL | 14-Oct-07 | O4:K42 | ST1146 | SRR1118654 | GCA_001727105.1 | MISD00000000 | SAMN02368266 | 103 | 5,138,446 | 115 | 4,714 |
CFSAN011149 | GCSL_R129 | Oyster | FL | 1-Oct-07 | O11:Kuk | ST1153 | SRR1118653 | GCA_001727115.1 | MISE00000000 | SAMN02368267 | 71 | 4,897,642 | 115 | 4,452 |
CFSAN011150 | GCSL_R130 | Oyster | FL | 1-Oct-07 | O4:K37 | ST1140 | SRR1118652 | GCA_001975475.1 | MUCG00000000 | SAMN02368268 | 76 | 5,057,199 | 108 | 4,594 |
CFSAN011151 | GCSL_R131 | Oyster | FL | 1-Oct-07 | O10:Kuk | ST1141 | SRR1840767 | GCA_001727125.1 | MISF00000000 | SAMN02368269 | 41 | 5,140,538 | 132 | 4,688 |
CFSAN011152 | GCSL_R135 | Oyster | SC | 21-Nov-07 | O3:Kuk | ST741 | SRR1840766 | GCA_001727155.1 | MISG00000000 | SAMN02368270 | 34 | 5,066,023 | 141 | 4,634 |
CFSAN011153 | GCSL_R136 | Oyster | SC | 21-Nov-07 | O1:K20 | ST775 | SRR1118651 | GCA_001727185.1 | MISH00000000 | SAMN02368271 | 78 | 5,098,402 | 139 | 4,651 |
CFSAN011154 | GCSL_R137 | Oyster | SC | 21-Nov-07 | O1:K20 | ST775 | SRR1118650 | GCA_001727195.1 | MISI00000000 | SAMN02368272 | 71 | 5,107,378 | 127 | 4,638 |
CFSAN011155 | GCSL_R138 | Oyster | SC | 21-Nov-07 | O1:K20 | ST775 | SRR1118649 | GCA_001727205.1 | MISJ00000000 | SAMN02368273 | 65 | 5,108,840 | 148 | 4,657 |
CFSAN011156 | GCSL_R143 | Oyster | FL | Nov-07 (exact date unknown) | O5:Kuk | ST743 | SRR1118648 | GCA_001727265.1 | MISK00000000 | SAMN02368274 | 280 | 4,947,784 | 148 | 4,510 |
CFSAN011157 | GCSL_R144 | Oyster | FL | Nov-07 (exact date unknown) | O5:Kuk | ST1149 | SRR1815536 | GCA_001727275.1 | MISL00000000 | SAMN03358825 | 48 | 5,085,869 | 181 | 4,641 |
CFSAN011158 | GCSL_R145 | Oyster | FL | Nov-07 (exact date unknown) | O5:Kuk | ST1149 | SRR1118647 | GCA_001727295.1 | MISM00000000 | SAMN02368275 | 64 | 5,074,938 | 156 | 4,624 |
CFSAN011159 | GCSL_R146 | Oyster | FL | Nov-07 (exact date unknown) | O5:Kuk | ST1149 | SRR1815537 | GCA_001727245.1 | MISN00000000 | SAMN03358826 | 50 | 5,084,933 | 172 | 4,649 |
CFSAN011160 | GCSL_R149 | Oyster | FL | 19-Mar-07 | O1:Kuk | ST313 | SRR1118646 | GCA_001727305.1 | MISO00000000 | SAMN02368276 | 61 | 5,067,880 | 152 | 4,641 |
CFSAN011161 | GCSL_R150 | Oyster | FL | 19-Mar-07 | O1:Kuk | ST313 | SRR1118645 | GCA_001727345.1 | MISP00000000 | SAMN02368277 | 25 | 5,066,369 | 149 | 4,663 |
The state for oyster isolates is the state where the product was harvested; for clinical isolates, this is the state that reported the isolate/illness. PEI, Prince Edward Island.
The date for oyster isolates is the date of harvest of the product; for clinical isolates, this is the date of isolation from the patient.