Table 1.
Description of significantly DE transcripts between IMF-differential pigs
| Gene symbol | logFC | logCPM | PValue | FDR | Chromosome |
|---|---|---|---|---|---|
| NAGLU | 10.55 | 0.22 | 2.48E-31 | 7.73E-27 | 12 |
| Novel1 | 10.49 | 0.18 | 2.56E-18 | 4.00E-14 | AEMK02000407.1 |
| ACBD7 | −2.78 | 1.97 | 5.52E-13 | 5.75E-09 | 10 |
| PPARGC1 | −1.80 | 8.55 | 8.39E-11 | 6.55E-07 | 8 |
| IRLnc | −2.29 | 2.11 | 8.48E-09 | 5.30E-05 | 1 |
| Novel2 | −8.04 | −2.25 | 2.99E-08 | 1.56E-04 | 18 |
| GADD45A | −1.12 | 4.15 | 5.62E-07 | 2.48E-03 | 6 |
| IRLnc2 | 7.95 | −2.12 | 6.35E-07 | 2.48E-03 | 9 |
| IRLnc3 | 7.68 | −2.44 | 2.13E-06 | 7.40E-03 | 2 |
| NR4A3 | −1.94 | 5.82 | 2.44E-06 | 7.62E-03 | 1 |
| SRXN1 | −1.23 | 2.50 | 2.69E-06 | 7.64E-03 | 17 |
| IRLnc4 | −1.26 | 2.98 | 3.15E-06 | 8.21E-03 | 10 |
| LEP | −2.05 | −0.51 | 4.85E-06 | 1.16E-02 | 18 |
| SLC20A1 | −1.06 | 5.60 | 5.38E-06 | 1.16E-02 | 3 |
| FASN | −1.21 | 4.18 | 5.57E-06 | 1.16E-02 | 12 |
| PRKAG2 | −1.31 | 4.79 | 6.90E-06 | 1.35E-02 | 18 |
| ND6 | 4.67 | −0.44 | 1.09E-05 | 1.89E-02 | MT |
| Novel3 | 5.01 | −1.94 | 1.09E-05 | 1.89E-02 | AEMK02000635.1 |
| IRLnc5 | 7.75 | −2.38 | 1.19E-05 | 1.95E-02 | 17 |
| IRLnc6 | 4.73 | −1.37 | 1.38E-05 | 2.11E-02 | 11 |
| ADIPOQ | −1.19 | 5.05 | 1.42E-05 | 2.11E-02 | 13 |
| SUSD3 | 7.44 | −2.68 | 1.57E-05 | 2.23E-02 | 3 |
| Novel4 | 3.77 | −1.18 | 2.58E-05 | 3.50E-02 | AEMK02000297.1 |
| C2CD3 | −1.18 | 3.94 | 2.73E-05 | 3.55E-02 | 9 |
| Novel5 | −1.52 | 2.65 | 3.57E-05 | 4.35E-02 | 3 |
| LRRC66 | 8.01 | −1.96 | 3.62E-05 | 4.35E-02 | 8 |
DE differential expression. IMF intramuscular fat. Gene symbol names of the genes. FC fold change (low - IMF vs. high - IMF). CPM counts per million. FDR false discovery rate. NAGLU N-Acetyl-Alpha-Glucosaminidase, Novel novel gene, ACBD7 Acyl-CoA Binding Domain Containing 7, PPARGC1 Peroxisome proliferator-activated receptor-gamma coactivator-1, IRLnc IMF-related LincRNA, GADD45A Growth Arrest And DNA Damage-Inducible Protein GADD45 Alpha, NR4A3 Nuclear receptor subfamily 4 group A member 3, SRXN1 Sulfiredoxin 1, LEP Leptin, SLC20A1 Solute Carrier Family 2 Member 1, FASN Fatty acid synthase, PRKAG2 Protein Kinase AMP-Activated Non-Catalytic Subunit Gamma 2, ND6 Mitochondrially Encoded NADH: Ubiquinone Oxidoreductase Core Subunit 6, ADIPOQ Adiponectin, SUSD3 Sushi Domain Containing 3, C2CD3 C2 Calcium Dependent Domain Containing 3, LRRC66 Leucine Rich Repeat Containing 66