Table 2.
Nucleotide Diversity Estimates (π) for Genes in the Sweep Region (Scaffold NW_01353536)
| Gene_ID | Start | End | Gene Name | π |
||
|---|---|---|---|---|---|---|
| ALM | FIG | R347 | ||||
| XM_013328221.1 | 2922570 | 2976883 | Dynein heavy chain | 0.0152 | 0.0137 | 0.0135 |
| XM_013328219.1 | 2977372 | 2991119 | ADAM 17-like protease | 0.0113 | 0.0090 | 0.0094 |
| XM_013328243.1 | 3002489 | 3003978 | Cytochrome c oxidase | 0.0066 | 0.0057 | 0.0045 |
| XM_013328367.1 | 3012239 | 3045757 | Tyrosine-protein kinase | 0.0076 | 0.0065 | 0.0068 |
| XM_013328167.1 | 3044389 | 3048122 | Uncharacterized | 0.0025 | 0.0014 | 0.0038 |
| XM_013328206.1 | 3049409 | 3053897 | DET1 homolog | 0.0054 | 0.0036 | 0.0104 |
| XM_013328222.1 | 3055117 | 3067241 | Cyclin-dependent kinase 7 | 0.0041 | 0.0032 | na |
| XM_013328168.1 | 3067370 | 3078948 | Tubulin polyglutamylase TTLL13-like | 0.0070 | 0.0056 | 0.0121 |
| XM_013328280.1 | 3097871 | 3099727 | GPI mannosyltransferase | 0.0012 | 0.0008 | 0.0018 |
| XM_013328281.1 | 3101631 | 3107700 | Methyl-CpG-binding domain protein | 0.0068 | 0.0052 | 0.0120 |
| XM_013328283.1 | 3128643 | 3157699 | Phospholipid-transporting ATPase | 0.0065 | 0.0055 | 0.0137 |
| XM_013328423.1 | 3159383 | 3164900 | Uncharacterized | 0.0015 | 0.0014 | 0.0012 |
| XM_013328361.1 | 3164948 | 3193977 | Unconventional myosin-like | 0.0059 | 0.0050 | 0.0050 |
| XM_013328247.1 | 3197609 | 3199024 | Krüppel-like factor 9 | 0.0050 | 0.0042 | 0.0035 |
| XM_013328326.1 | 3204704 | 3279423 | Protein groucho | 0.0026 | 0.0026 | 0.0026 |
| XM_013328229.1 | 3304902 | 3307354 | Phosphomevalonate kinase | 0.0022 | 0.0025 | 0.0017 |
| XM_013328250.1 | 3344559 | 3350148 | Sodium channel protein para | 0.0000 | 0.0001 | 0.0001 |
| XM_013328169.1 | 3387986 | 3390408 | CYP6B54 | 0.0004 | 0.0008 | 0.0004 |
| XM_013328169.1 | 3393988 | 3396394 | CYP6B55 | 0.0004 | 0.0008 | 0.0004 |
| XM_013328369.1 | 3399243 | 3401314 | CYP6B56 | 0.0001 | 0.0001 | 0.0000 |
| XM_013328341.1 | 3403909 | 3420607 | Protein ariadne | 0.0001 | 0.0003 | 0.0001 |
| XM_013328377.1 | 3421473 | 3423241 | Uncharacterized | 0.0001 | 0.0002 | 0.0002 |
| XM_013328378.1 | 3423369 | 3430390 | Isoleucine–tRNA ligase | 0.0002 | 0.0007 | 0.0003 |
| XM_013328269.1 | 3433176 | 3489393 | dmX-like protein 2 | 0.0012 | 0.0014 | 0.0003 |
| XM_013328231.1 | 3490744 | 3524106 | Endophilin-A%2C transcript variant X1 | 0.0014 | 0.0011 | 0.0005 |
| XM_013328234.1 | 3525167 | 3528547 | Polyubiquitin-C | 0.0030 | 0.0028 | 0.0021 |
| XM_013328235.1 | 3529722 | 3548710 | Ras GTPase-activating | 0.0016 | 0.0020 | 0.0004 |
| XM_013328236.1 | 3549071 | 3550177 | Protein kish-A | 0.0000 | 0.0005 | 0.0001 |
| XM_013328238.1 | 3550487 | 3554188 | Protein prenyltransferase alpha subunit | 0.0008 | 0.0013 | 0.0002 |
| XM_013328171.1 | 3584697 | 3630468 | Uncharacterized | 0.0019 | 0.0028 | 0.0003 |
| XM_013328188.1 | 3631722 | 3638019 | Uncharacterized | 0.0016 | 0.0022 | 0.0006 |
| XM_013328187.1 | 3745239 | 3796518 | Protein unc-13 homolog A | 0.0021 | 0.0024 | 0.0002 |
| XM_013328228.1 | 3800374 | 3817393 | Actin-binding Rho-activating protein-like | 0.0025 | 0.0038 | 0.0002 |
| XM_013328172.1 | 3826528 | 3849030 | Gonadotropin-releasing hormone II receptor | 0.0026 | 0.0043 | 0.0005 |
| XM_013328189.1 | 3852565 | 4034421 | Small conductance Ca-activated K channel | 0.0088 | 0.0096 | 0.0036 |
| XM_013328392.1 | 4090436 | 4108229 | Uncharacterized | 0.0071 | 0.0068 | 0.0026 |
| XM_013328198.1 | 4240437 | 4246388 | Extensin-like | 0.0151 | 0.0137 | 0.0076 |
| XM_013328173.1 | 4247890 | 4251407 | Uncharacterized | 0.0056 | 0.0051 | 0.0038 |
| XM_013328174.1 | 4268658 | 4270209 | Uncharacterized LOC106129578 | 0.0078 | 0.0066 | 0.0053 |
| XM_013328217.1 | 4270710 | 4272681 | Tyrosine–tRNA ligase%2C cytoplasmic | 0.0022 | 0.0025 | 0.0007 |
| XM_013328325.1 | 4275218 | 4323747 | RNA polymerase II elongation factor ELL | 0.0062 | 0.0053 | 0.0046 |
Note.—Only genes with read coverage (>50) were used to calculate π are shown (41 out of 44 genes). Dark gray cells π > 0.02, light gray and white cells π < 0.002, and white cells are defined hard sweep region in all three populations.