Table 1.
Database for circRNA research.
| Database | Website | Function | Ref |
|---|---|---|---|
| circRNADb | http://202.195.183.4:8000/circrnadb/circRNADb.php | Offering the detailed information of circRNAs, especially the exon splicing, IRES and ORF | [95] |
| CircPro | http://bis.zju.edu.cn/CircPro | Analysis of protein-coding potential of circRNAs | [96] |
| Circbase | http://www.circbase.org/ | Providing circRNAs information from multiple species | [97] |
| Starbase v2.0 | http://starbase.sysu.edu.cn/ | Providing the RNA-RNA and protein-RNA interaction networks | [98] |
| CIRCpedia v2 | http://www.picb.ac.cn/rnomics/circpedia/ | Containing circRNA annotation across 6 different species | [99] |
| DeepBase v2.0 | http://deepbase.sysu.edu.cn/ | Containing 14,867 human circRNAs | [100] |
| Circnet | http://circnet.mbc.nctu.edu.tw/ | Describing the regulation between circRNAs, miRNAs and genes | [101] |
| CircInteractome | http://circinteractome.nia.nih.gov/ | Providing bioinformatic analysis of binding sites on circRNAs | [102] |
| CSCD | http://gb.whu.edu.cn/CSCD/ | Predicting cellular distribution of circRNAs, MRE, RBP and variable splicing of related genes | [103] |
| Circ2Traits | http://gyanxet-beta.com/circdb/ | Predicting the interaction among miRNAs, lncRNAs and circRNAs | [104] |
| CirclncRNAnet | http://app.cgu.edu.tw/circlnc/ | Offering a “one-stop” resource for analysis of ncRNA biology | [105] |
| CircRNADisease | http://cgga.org.cn:9091/circRNADisease | Providing experimentally supported circRNA and disease associations | [106] |
| ExoRBase | http://www.exorbase.org/ | Including annotation, expression level and possible original tissues about 58,330 circRNAs in human blood exosomes | [107] |