Table 1.

The performance of DeepGRN with four metrics used in the DREAM Challenge

TF name	Cell-type	auROC	auPRC	Recall at 50% FDR	Recall at 10% FDR
CTCF	PC-3	0.987	0.767	0.766	0.603
CTCF	induced pluripotent stem cell	0.998	0.902	0.945	0.744
E2F1	K562	0.989	0.404	0.388	0.100
EGR1	liver	0.993	0.405	0.318	0.021
FOXA1	liver	0.985	0.546	0.584	0.164
FOXA2	liver	0.984	0.548	0.588	0.143
GABPA	liver	0.991	0.516	0.488	0.154
HNF4A	liver	0.971	0.636	0.700	0.263
JUND	liver	0.983	0.535	0.585	0.027
MAX	liver	0.990	0.425	0.349	0.004
NANOG	induced pluripotent stem cell	0.996	0.499	0.515	0.035
REST	liver	0.986	0.482	0.527	0.030
TAF1	liver	0.989	0.424	0.393	0.000