Table 2.
TF | Cell | Anchor | FactorNet | Cheburashka | Catchitt | DeepGRN |
---|---|---|---|---|---|---|
CTCF | PC-3 | 0.67 | 0.17 | 0.83 | 0.5 | 0.33 |
CTCF | induced pluripotent stem cell | 0.83 | 0.33 | 0.67 | 0.5 | 0.17 |
E2F1 | K562 | 0.5 | 0.83 | 0.67 | 0.17 | 0.33 |
EGR1 | liver | 0.17 | 0.83 | 0.67 | 0.33 | 0.5 |
FOXA1 | liver | 0.67 | 0.33 | 0.83 | 0.5 | 0.17 |
FOXA2 | liver | 0.33 | 0.83 | 0.67 | 0.5 | 0.17 |
GABPA | liver | 0.33 | 0.83 | 0.67 | 0.5 | 0.17 |
HNF4A | liver | 0.67 | 0.33 | 0.83 | 0.5 | 0.17 |
JUND | liver | 0.17 | 0.83 | 0.67 | 0.5 | 0.33 |
MAX | liver | 0.17 | 0.83 | 0.33 | 0.67 | 0.5 |
NANOG | induced pluripotent stem cell | 0.33 | 0.5 | 0.83 | 0.67 | 0.17 |
REST | liver | 0.67 | 0.33 | 0.83 | 0.5 | 0.17 |
TAF1 | liver | 0.17 | 0.5 | 0.67 | 0.33 | 0.83 |
Bold scores denote the TF and cell-types that DeepGRN rank as the highest