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. 2021 Jan 19;7:599079. doi: 10.3389/fmolb.2020.599079

Table 1.

Chemical structures and docking results of phytoconstituents on Mpro of SARS-CoV-2.

Comp. No. Name PubChem ID Chemical structure Docking score
against Mpro (kcal/mol) (PDB ID: 6LU7)
Glide emodel (kcal/mol)
1 Procyanidin A3 16129741 graphic file with name fmolb-07-599079-i0001.jpg −12.86 −68.210
2 Acetoside 5281800 graphic file with name fmolb-07-599079-i0002.jpg −11.974 −61.801
3 Rutin 5280805 graphic file with name fmolb-07-599079-i0003.jpg −11.187 −95.135
4 Solanine 262500 graphic file with name fmolb-07-599079-i0004.jpg −10.301 −81.460
5 Procyanidin A4 53349182 graphic file with name fmolb-07-599079-i0005.jpg −10.005 −66.051
6 Procyanidin B4 147299 graphic file with name fmolb-07-599079-i0006.jpg −9.940 −60.339
7 Hypericin 3663 graphic file with name fmolb-07-599079-i0007.jpg −9.560 −85.277
8 Quercetagetin 5281680 graphic file with name fmolb-07-599079-i0008.jpg −9.407 −67.987
9 Procyanidin 107876 graphic file with name fmolb-07-599079-i0009.jpg −9.209 −62.543
10 Astragalin 5282102 graphic file with name fmolb-07-599079-i0010.jpg −9.120 −71.431
11 Procyanidin A1 5089889 graphic file with name fmolb-07-599079-i0011.jpg −9.204 −63.702
12 Baicalin 64982 graphic file with name fmolb-07-599079-i0012.jpg −8.818 −66.079
13 Procyanidin B2 122738 graphic file with name fmolb-07-599079-i0013.jpg −8.557 −57.315
14 Salicin 439503 graphic file with name fmolb-07-599079-i0014.jpg −8.448 −49.230
15 Theaflavin 135403798 graphic file with name fmolb-07-599079-i0015.jpg −8.383 −79.414
16 Emodin-8-glucoside 99649 graphic file with name fmolb-07-599079-i0016.jpg −8.211 −67.011
17 Hinokiflavone 5281627 graphic file with name fmolb-07-599079-i0017.jpg −8.130 −87.255
18 Quercitrin 5280459 graphic file with name fmolb-07-599079-i0018.jpg −8.121 −43.916
19 Procyanidin C2 11182062 graphic file with name fmolb-07-599079-i0019.jpg −8.107 −63.103
20 Indican 441564 graphic file with name fmolb-07-599079-i0020.jpg −8.084 −40.609
21 Chebulic acid 71308174 graphic file with name fmolb-07-599079-i0021.jpg −8.077 −72.474
22 Amentoflavone 5281600 graphic file with name fmolb-07-599079-i0022.jpg −7.981 −54.006
23 (-)-Catechin gallate 6419835 graphic file with name fmolb-07-599079-i0023.jpg −7.956 −85.457
24 Fisetin 5281614 graphic file with name fmolb-07-599079-i0024.jpg −7.940 −53.530
25 Procyanidin C1 169853 graphic file with name fmolb-07-599079-i0025.jpg −7.814 −58.015
26 (-)-Epicatechin gallate 107905 graphic file with name fmolb-07-599079-i0026.jpg −7.857 −88.167
27 Morin 5281670 graphic file with name fmolb-07-599079-i0027.jpg −7.631 53.217
28 Garcinol 174159 graphic file with name fmolb-07-599079-i0028.jpg −7.551 −60.652
29 Glycyrrhizic acid 14982 graphic file with name fmolb-07-599079-i0029.jpg −7.549 −69.351
30 Sweroside 161036 graphic file with name fmolb-07-599079-i0030.jpg −7.547 −36.098
31 Wikstromol 99938 graphic file with name fmolb-07-599079-i0031.jpg −7.547 −64.848
32 Baicalein 5281605 graphic file with name fmolb-07-599079-i0032.jpg −7.463 −52.709
33 Myricetin 5281672 graphic file with name fmolb-07-599079-i0033.jpg −7.311 −60.412
34 Kaempferol 5280863 graphic file with name fmolb-07-599079-i0034.jpg −7.307 −54.359
35 Procyanidin A2 124025 graphic file with name fmolb-07-599079-i0035.jpg −7.302 −59.071
36 Calystegine C1 385737 graphic file with name fmolb-07-599079-i0036.jpg −7.234 −46.486
37 Chrysin 5281607 graphic file with name fmolb-07-599079-i0037.jpg −7.162 −48.230
38 Genistein 5280961 graphic file with name fmolb-07-599079-i0038.jpg −7.138 −52.315
39 Arbutin 440936 graphic file with name fmolb-07-599079-i0039.jpg −7.137 −43.350
40 Apigenin 5280443 graphic file with name fmolb-07-599079-i0040.jpg −7.090 −52.242
41 Curcumin 969516 graphic file with name fmolb-07-599079-i0041.jpg −7.077 −62.444
42 Luteoline 5280445 graphic file with name fmolb-07-599079-i0042.jpg −7.071 −56.330
43 Robinetin 5281692 graphic file with name fmolb-07-599079-i0043.jpg −7.057 −60.290
44 Theaflavin-3,3′-digallate 135403795 graphic file with name fmolb-07-599079-i0044.jpg −7.010 −117.336
45 Ipolamiide 442425 graphic file with name fmolb-07-599079-i0045.jpg −6.996 −45.556
46 (-)-Gallocatechin gallate 199472 graphic file with name fmolb-07-599079-i0046.jpg −6.847 −86.726
47 (-)-Catechin 73160 graphic file with name fmolb-07-599079-i0047.jpg −6.709 −51.988
48 Mangiferin 5281647 graphic file with name fmolb-07-599079-i0048.jpg −6.651 −63.973
49 Rhamnetin 5281691 graphic file with name fmolb-07-599079-i0049.jpg −6.578 −55.659
50 Cyanidin 128861 graphic file with name fmolb-07-599079-i0050.jpg −6.535 −63.976
51 Epitheaflavin monogallate 135625500 graphic file with name fmolb-07-599079-i0051.jpg −6.505 −109.923
52 Cordifoliside A 101676711 graphic file with name fmolb-07-599079-i0052.jpg −6.428 −71.467
53 Ellagic acid 5281855 graphic file with name fmolb-07-599079-i0053.jpg −6.393 −48.814
54 Calanolide 1201 graphic file with name fmolb-07-599079-i0054.jpg −6.391 −50.372
55 Morelloflavone 5464454 graphic file with name fmolb-07-599079-i0055.jpg −6.300 −72.764
56 Aloe emodin 10207 graphic file with name fmolb-07-599079-i0056.jpg −6.229 −46.278
57 Scutellarin 185617 graphic file with name fmolb-07-599079-i0057.jpg −6.137 −69.299
58 Cordifoliside C 101676208 graphic file with name fmolb-07-599079-i0058.jpg −6.123 −59.081
59 Cordifoliside B 101676207 graphic file with name fmolb-07-599079-i0059.jpg −5.965 −58.814
60 N3 (Co-crystal ligand) - graphic file with name fmolb-07-599079-i0060.jpg −7.93 −118.489

Bold values show the top docking scores.