Table 1.
Environment | Prevalence threshold in number of samples | Number of selected nodes [fraction from initial data] | Number of connected nodes [number of Unknown at genus] | Number of edges in network [K-K, K-U, U-U at genus] | Ratio of number edges vs. number nodes |
---|---|---|---|---|---|
Hot Springs | 104 | 291 [4.4E − 4] | 290 [133] | 552 [167, 230, 155] | 1.9 |
Hypersaline | 85 | 193 [3.7E − 4] | 191 [118] | 516 [89, 125, 302] | 2.7 |
Deep Sea | 75 | 102 [1.6E − 4] | 97 [51] | 194 [59, 65, 70] | 1.9 |
Polar | 113 | 279 [9.6E − 4] | 274 [171] | 797 [112, 244, 441] | 2.9 |
K-K: the edge connects two Known nodes at the genus level.
K-U: the edge connects one Known and one Unknown node at the genus level.
U-U: the edge connects two Unknown nodes at the genus level.