Fig 7. Positive selection around the Ace1 duplication.

A-C) Profile of Garud’s H₁₂, H₂/H₁ and haplotypic diversity around the Ace1 duplication, for haplotypes carrying the 280S- or wt-tagging variants at 2R:3481632. Statistics are calculated in blocks of 500 variants with 20% block overlap. Includes averages of each statistic outside the duplication, upstream and downstream of the breakpoints (with standard errors from jackknife haplotype resampling). D) Extended haplotype homozygosity (EHH) at the duplication breakpoints for haplotypes carrying the 280S- or wt-tagging variants at the 2R:3481632 locus. Additional plots for all tagging variants are available in S11 and S12 Data. Note that Garud’s H statistics and EHH assume a diploid genome, and estimates from within the duplication can thus be biased.